Gene detail

Detailed information of EVM0014774.1 in Myxobolus honghuensis

Genomic Location: Contig00208:119221...127020
NR annotation: KAF0989168.1, hypothetical protein HZS_2168 [Henneguya salminicola]

Gene Structure

More details in Jbrowse

Sequence

CDS

EVM0014774.1

ATGGAAGAAATAAATGAATTATTAAAAAGCTGTGAATTCACAAACAGATCATCAGATTCGATAATACTCGTTAAGTCAAATTCAGATATAATTCCAGTTGAAAACGAAAATAATAAAAACATTTACATTCCTCAGTGCATACTCTCTCAAATGCCGAAAACGATAAATTGCGAAAATCTGGAGGCGAGAGCAGTAATCATAACAGATTTGTTCAATGAAAACGTAAATGATTTAAAAGAATACTTCAAAAATTTATCAAATGAATATCTCGATACTAAAAAAACAAATATTCACAAAGAAATACTTCTAAAAAACGATTTCTCATTTAAATTATGCGATTTGGATTCTATAACGTATTCCCATCCAGAATTAAAACTAAATCATGACATTATCGACACAATAACAAACACAATTCAGAATCCTAAAAAATCCACAAATCCCAACGTCGATAAACAAAAAATCATAGATTTGATAAACAATTCATATAAGAAACAAAAACACTTTAACGATGGAAAATACTCACACAAAGAATTCATGGACTATATTTCAAAAAATTACGACGAATGCAAAGTTACAGAAATTTATGAATCTTCTGAAAAGGTTAAAAAATTTAAATACGATTCAGAGATTAACGATTTGATCAAAATTTATGATGAAAATGATAGCGTTTCAGATTTTGTTGCTATTACTGATTCTAAACCAAAAATAGTAGATGCTGATGATTTCTTGATACACAAATTTGAAGAAATTAGAGATAAAATGCCTATTACGTTTCCATTTGAGTTGGATGATTTTCAAAAAAAAGCAGTTTATTTGATTGAAAAGAAAGAAAATGTTTTGGTGGCTGCCCATACCAGTGCCGGAAAAACCGTTATGGCGGAATATGCAATCGCGAGTTCGATTTTATTAGGAAAAAAAACTATTTATACTTCACCTATTAAAGCATTATCTAATCAGAAATTTTACGAGTTTAGAAAAAAATTTAAGGATGTAGGAATTATTACTGGGGATATTCAAATTAACGAAAATGCCCAAACAGTGGTTATGACAACTGAAATTCTTAGATCTATGTTATATCGGGATAGTTCAAAATTAAATGATGTCGCCTATGTAATTTTTGATGAAGTTCATTATATAAATGATGAAGAACGCGGAGTGGTTTGGGAAGAAATTCTGATCATGCTCCCTAAGCATATCAGATTAGTCCTTCTTTCTGCGACCGTCCCGAATTGTCACGAAGTCGCAAGTTGGATTGGAGGAGTTCGGCACCAAACGATAAATGTCGTAATTACATACAAAAGGCCGGTACCTCTGGAGCATATTTTATATTATGGTGTAAGCCATATCACTAAAGACGATATCCTTAAAGTTATAGATTCAAACGAACAATTTAATCGGATTAACTTCCGTAAAGTCGAACAGATTATAAGTTCCCGCGAAAAATCGAATCAGAATACAAAAAATTTCATGATAAATAAGAATCATATTTTTGCTTTAGTAGATCATTTATCATCCCAAAATAAACTACCTTGTATAATTTTTATTTTTTCGCGACAAAAGTGTTTCGATGTCGGAGATTTGTTATACTCAAAAGATTTTACAACAAAAACAGAAAAATATTTAATTAAAACTTTTTTTACCACAAGTATTTCAAGGTTAAGTGAAGAAAATAGGAATCTCTATCAAGTTAAATTATTTGAATCTTTGTGTATTAAAGGGATCGCCGTTCACCATAGTGGTGTATTACCAATCCTTAGAGAAATCGTTGAATTACTTTTCCAAAAAGAATTAATTAAAGTTCTCGTCGCTACGGAAACTTTCGCGATAGGGGTTAATATGCCCGCCAAAACTGTCGTATTTACCGAACTTGAAAAATTTTCCGGGCAACAAAAAAGACCACTATTGTCATCCGAGTACATCCAAATGGCGGGAAGGGCTGGGCGGCGAGGCCAGGACACAATAGGATCAGTTTATATAATGGCAATGAATAAACTCCCTGGAGAAGAGGAATTTCGATCAATGGCTATGGGATCTGCTTTAAATATTACAAGTAGATTTAGATTAACATATGGAATGATTCTTAATCTTCTTTCTACAAGCAGATTAGACGACACCCGTGTTGAACATATAATGAAATCTAGCTTTAACGAATTTATTCAACTTTCATGTTCACAGGAGCAAGTTAAAAAATTAAACCGCCTAAAAGAGGATTTGGCTGAATTAAAAGCGAAACATAACTATTCTGAATGCTGTTCAGATCTAGAATCCTACAGTACCGCTATTGCAAAATATATGCAAATATGGAAAGAAATTCTTGTCTATTCTGGTACTAGTCGTACTCAAACGAGTCATTTCTACTCTCAGGGACGTGTCGGATTTCTTCGTATTGGATCGTCAATATATACCCGCCCTTGTATAATTCTGGATTTTCCAAAACCCATAAATAAATCTTCGGAACTTTTTAACGATCCTTCTTTAAAACATGTTTTGGTTATATTTCCTGCCACCCCCTCAGATACGAATATCGATAAACTTTTTGAATCTAACGACAAAACCACATATATTCTCATAAATGAAATAAATAATTACGAAATCGATAATTTGCATATAACAGAGATAGATTTAAAAAAAGCTGGCCATATGGACGATAATGAATTCGCAAATTTAAATAAAAATTATATTGATTCAATTTCTAAACTAAAAAAGAATTATAAATGCTTACATTGTAAAGATATCTTGGCTCATTCAGAGAAGATTATTGATATTAAACGATTAGAGGCTGAAATAGAAAAAGAAACTCTTCTATTATCAGATGGTGGGCTTTCTCTACTACCAGAATACAATAAACGCATTCTTAAATCTCTAGATTTAATAGATGAAAATTTAATGTTAACTTTAAAGGGTAGAGTTGCTGTTAAATTTACAAATAATTTCGAAATCATTTTAACCGAACTTTTATTTAATGGAACTCTTAAAGATTTAAATCATTGCCAACTGGCCGCAGTTTTATCATGCTTCACTGATCAGGGTCTCGTCAAGGTTGAAACAAAAAAGGGTACTATTAAAAAATACGAACTTGACAAGATATGGGATCTTATAGATGATGTTCTTTACAATCTGGACGATATGGAACGAAATTTGCAGCTTATAACTTGTGAAAGACCAGTCCATCCTAAACTTATGGAGGGAATTTATGAATGGGCGTTAGGTTGCGATTTTCGTTCTTTGATTCGTTTCGTTTTAAGATTGGATGAGATTTGTAAAGAATTAGAGAAGGCTGCTTTACATATCGGAAATATCGAATTAAAGAACACTGCCAAAAAGACAAGAGAATCTATTCGAAGAGATATTATTAACATACCTAGTTTATATCTTGTAGACTAA

Transcript

EVM0014774.1

Protein

Uniprot

Uniprot term	Description
O59801	Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC550.03c PE=3 SV=1
P35207	Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SKI2 PE=1 SV=2
Q6NZR5	Superkiller complex protein 2 OS=Mus musculus OX=10090 GN=Skic2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF08148	DSHCT	DSHCT (NUC185) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012961	Domain	ATP-dependent RNA helicase Ski2/MTR4, C-terminal	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR016438	Family	ATP-dependent RNA helicase SKI2-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050699	Family	RNA/DNA Helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12131	ATP-DEPENDENT RNA AND DNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0006401	Biological Process	RNA catabolic process	Interproscan
GO:0055087	Cellular Component	Ski complex	Interproscan
GO:0070478	Biological Process	nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay	Interproscan