Gene detail

Detailed information of EVM0014856.1 in Myxobolus honghuensis

Genomic Location: Contig01114:263608...266533
NR annotation: KAF0989950.1, hypothetical protein HZS_6436, partial [Henneguya salminicola]

Gene Structure

More details in Jbrowse

Sequence

CDS

EVM0014856.1

ATGGAGTTAACAAGTCAAATTTTCAAGCCATATAGAAAAATCGGAAGTTATTGCATCGATCGTGGATTCTGCGTAGAAACTATAGGTTCAAAAAATTATATCACAACATCCATAGGAAACTCATTTCTAACTCTTGACGTGAGAATTTCAAAAAAACTTCGTCTTATTGCCGCAAGTGAACATTTTCCTGGAAAAATACAAAGTCTAGCGAGTACTGAAAACGAAAGACTCGTATGCGCATGCGACAATAAAATATTTATATGTTTTCGTGGTGAATCGACTTGCCCGCCAATTAATTTCGATTCTATAATCAAAAATATATTTACGATAGGCGAAATTCTTCTCATATGTTGTGAAAACGGGGATTTCATATCATATGATGTTAAAGAAAAAAGCGCTTGCGCGATAAAAACTTGGTGCCATCCGCCTACATACATCAACAAAATTGTTATTGGCTTATCTAATGGAATTTTAGAGATCTGGGATCTTTTACGCTGTAAATCTATAAAAACTTTGAAATCCTATGAAAATTTATCACTTATAAAAGAGTCTCCTGCTCTTGATATAATTGCGGTTTGCGCGTGCGATTATTTTTACCTACATAATATTAAAGATGATGTGATTTTATTTTCGTTTAAATCTAGTTTAAATTCTATTTCCTCGATTTCATTCCAGAAAAACCAATTTTCATATTCTAATAATTCTATAGATTCTTATGATATTCAAAATAACACTTATATAAATAATCAAAACTTGGTTGCAATTTCCGGTGAAAAGGGGCCGATTATCATTTTGGATTTGTCGGCTAAGAAGCTTATCTCGACGATCGACTCGTATTCGGGAATTGTCGTCGGATTAGAATTTATAAATACTGGAGAATTAGTTACCGCCAGTACTGATAATCGGATTAATATTTACGGATTTGACGCCAATTTACAACCCAAATTGTTGAAATTTAGATCTGGAATTTCAGATCGGATTTCAAAATTGCGGTTCATAAGAAATGGCGGGCTGAGCTTAATTGCTGCTTATGGCAATTCTTTAAGATTTCTTAATCCAAAAAGGGATGAACAATCGGTAGAATTCGCTAGGACTAAAAAGATTAAGGAATGGAAGCAGAAAACTACGAAAATGGTTAATTTTGGGGAGATTATAGATTTTGATGCAGATGCTGCAAAAGAGCATTTTTGGGAAAATATTGTCACTTGTCATGACAAAACTAAATGGGCGCACGTGTGGCGGTTAGATAATAAATCTATGGGAAAGAAAAAATTAAAATTTGAAATTTTGAAAAACCAGTCACCTACATGTGTATGCATTTTAGCATGTTGTAATTCATGCATTTTAGGATATAATTTTGGCGCCTTAGAAATTTTTAATCTGCAATCTGGGCGGCATTGTGGTTCGTTTATAGATACCGATTTCTTAAGCGGTCGAATTATTGGTATTGTCGGAGATGGCCGTAATATCCACGTGGCGTCTATTGATAACGATTATTTACGAATATGGTTTTATTCATCGAAAAATCTCAAATCTCGTATAAAGCTTGATTTTATTCCAAATAGAATTGATATTAATCGAGAAAACTCTCTTGTAGCAATTTCCGGTTATGGTTGTGTAATTATTGTGGACGTCATTACATCTACAATTACGAGGAATTTTAAAACTGATTACCCGATTTTTACCGACATTTGTATCTCGACGGATGGTCGATGGTTAATTTCCGCCAATACTCGTAAATCTTCGGAAGACCTTTTGGAGGGAAATTTACATAAAATTTATATTTGGGACCTTCCTTCATCTAATGTAAATTATCTTATGTTTTCTGATGAAATAATTCAACCGTTACGTTCTAGTGTGGATTATAATTCAAAAGAAAAATTAAATTTCGCACATGACCATTTGGAATGTATTGAAAAATTGGCGACCTTATCTTTACTACCAGAATCCAAATGGAAATATTTAGATAAAATTGATTTAATCATGGAACGATCGAAACCGACAGAAAAAGATACTATAGTGTCAGAAGCGCCATTTTTCATCCCGACAGTTCCTGGTCTAAAAACAGTTTTCGATATTGAAGAACCAAAACCTAAAAAAAAGCGTGGGAAAAAACAACCTCCTTGTGTTTTGTTGTCAAAAGATGTCCAAAACTATAAACCCGAAAATAAGTATGAGATTTTGGAGAAATTAATGAAATATTCTCCCGCAGAATTGGATGTTCAAATTTCTTTAATGATTGACTCAGATGAGGATCTTAAAAAGTTTTTGGATATTTTGATCGATCTTTTATCTACTTATCAATGTTTGGATTTTATTCAAGGAATAATTTCTTTATTATTGAATATTCATTCCGAGAGATTAATGGATCCTTCATTTAACGAATATTTGAAGAAAATTTTAGAATTTACTCAGCAAAAATGGGATTGTCTTAAAAAATCATGCGATCAATCGCTCAGTGTTTTAGGATTTATTCGTAGTAATGTAACTAATTTTTAA

Transcript

EVM0014856.1

Protein

Uniprot

Gene family

Uniprot term	Description
Q8NI36	WD repeat-containing protein 36 OS=Homo sapiens OX=9606 GN=WDR36 PE=1 SV=2
O14053	U3 small nucleolar RNA-associated protein 21 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC1672.07 PE=3 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04192	Utp21	Utp21 specific WD40 associated putative domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007319	Domain	Small-subunit processome, Utp21	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR011047	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22840	WD REPEAT-CONTAINING PROTEIN 36	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006364	Biological Process	rRNA processing	Interproscan
GO:0032040	Cellular Component	small-subunit processome	Interproscan
GO:0034388	Cellular Component	Pwp2p-containing subcomplex of 90S preribosome	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14554	UTP21, WDR36; U3 small nucleolar RNA-associated protein 21	-	Ribosome biogenesis	ko03009	deepkoala