Gene detail

Detailed information of EVM0015098.1 in Myxobolus honghuensis

Genomic Location: Contig01049:1890082...1899170
NR annotation: KAF0991793.1, hypothetical protein HZS_571, partial [Henneguya salminicola]

Gene Structure

More details in Jbrowse

Sequence

CDS

EVM0015098.1

ATGAAACCTGAAATTGTTATTGATAAACATGAAATTTACAAAGGGAATAAACGAAACAACAAGATTGTAGCAAATATCTTCGTTTTTTCAGATTTATTCGATGCCGAAATACCTTCGGATGTTATCGGAAAAATGGAAAAAACAAATAATATGAAATGGAAGGAGATAAAAGATTTGGTAGGAAATATTCCTCCCGCGCGACATGGTCACCGCTGTGTGCGCTACGGAAAGTTCATAATAGTGTTAGGGGGTGGAAATGAAGGACTTATGTCGGATGTCGCCATTTTAAACACGACCAATAATAAATGGTTTAGCCCCGCTGCAGCACACTCTTCGTTTCTCGCATGCGCGGCACATGGCACAGCCCTCGTTGATACTGATATATACGTTTTCGGCGGGATTCTTGAATATGGGGACTATAGTAACCAGATTTATAAAATCTCTTTGCTCGATTGGTCGATAATCTTATGTGATGTTAAAATTAAAGATGAAGAAGATGAACCCGTTCCCAGACTTGGTCATTCATTCACTCCTGCTTCCAGCAATCGAATCTTTATGTTTGGAGGATTGACAAACAGTTCAACTATTTTCGTTTCCACTCCTAGATATCTAAACGATTTATACATTCTCAAAATTCCTCACAATAATACCAAATTAACCTGGATTAAACCAGATTTTTCTGGCCAACCACCCTCACCCCGCGAATCTCATTCAGCTTTAATTCATTTTTACAAAAATAGAGAAACGCTAATCATCTACGGCGGAATGTGCGGTAATCGTCTAGGCGATGTTCATTTCCTCGACATCGGTTTTCCTATAATTTATACAGAAACTCTAACATGGACTCAACCTTTAATCTTAGGAGAACCTCCACCTTCTCGAAGCCTACATATCGCAGGAATCTGCCAAAACAAAATGATCATATTTGGAGGCTGGATTCCAATAAATGAAAAACATAAAAAACAACAAAAAAGTGAAGAGCATTTCGAAAGTGAATGGGAATGCACTAATGATGTAGCCGTCCTGAATCTCGAAAATCTATCATGGGAAACGTATATCAATAATGAGAAAGCTGAGAATGCGCCGAAAGCAAGAGCCGGACATTGTGGTTGTGTTATAAATGATCGACTTTATATCTGGAGTGGAAGAGATGGTTATAGGAAATCCTGGAGTGACCAAGTGTGCTGTAAGGACCTATGGTTTCTCGAAATAACAAAAGCAGAACCTCCTTCAAAACTGATGATGGATGGCAATGATACAATGTCTGTAAGTCTAAAATGGGACCCTATCCATAACGCTGATTTCTATCTCGTTCAAGTTATGAAAGTTGGGCCTAATACTATCTGTAATTCCAGGGATGTTAAAAATATAATGGAAAGAAATAAACAAAATACGAAAGAACCCGTTAATCCGATTAGTGGTAACAGCCCATTACTTCCCGCTTTAAAATTAGTAGCCCCCGCTCAAGCTTTAAAACCTGAAGATTTCTTCTGGACGACATTCTTCTATGATGAGCCTTTCATACCTCTTTCTAATTTTACACCTCAAAAAGAAGACAAAATCGATCCAGATTCTAACAATCTTCAAAAGGAAGTATTACAGAATATTCAAAATGATCAGAAATTAGTCAAGCACACTCTGACGACTTCTACTCCATTTTCGAACAAAAATGTAACTAAAATTGATAGTTTAATGAATCGCAATATCCCTCCATTGGCAGTTTCTATTGTTCCAACCACACAGATTCAAAAACCTAAGGAAATTATTCAAGTTACTCCTATTTATAACCAATATAAAAGCTTTATATTCTCTGAAATTCCCTCTGGAAAATGGTTTGAGTCAGTGATCGTATCTGAACCCAAAGCCTGTGTAACTCAGTTTTTTATTGACTTAAATGAAAATTTATCTACAGGAAAAAATTCTGCTAACAGAAAGACTATTTTATTGGAGTCAAATTTCACCTATAGACTTCGAGTAGCGTCTGTGAATTCTTGTGGTATAGGAAATTTCAGTGCCCTTTAA

Transcript

EVM0015098.1

Protein

Uniprot

Uniprot term	Description
D3ZN95	Host cell factor 1 OS=Rattus norvegicus OX=10116 GN=Hcfc1 PE=1 SV=1
Q61191	Host cell factor 1 OS=Mus musculus OX=10090 GN=Hcfc1 PE=1 SV=2
P51611	Host cell factor 1 OS=Mesocricetus auratus OX=10036 GN=HCFC1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13418	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan
PF13854	Kelch_5	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015915	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR043536	Family	Host cell factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46003	HOST CELL FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003713	Molecular Function	transcription coactivator activity	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0035097	Cellular Component	histone methyltransferase complex	Interproscan