Detailed information of FUN_000147-T1 in Siderastrea siderea

Genomic Location: contig_1:2399469...2413412
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_000147-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR039267
all species →		FamilyU7 snRNA-associated Sm-like protein Lsm11Interproscan
IPR010920
all species →		Homologous_superfamilyLSM domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21415
all species →		U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM11Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005683
all species →		Cellular ComponentU7 snRNPInterproscan
GO:0006398
all species →		Biological ProcessmRNA 3'-end processing by stem-loop binding and cleavageInterproscan
GO:0071209
all species →		Molecular FunctionU7 snRNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_000147-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_000147-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
7.6Max TPM
0.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 6.27 7.62
unannotated 1 1 3.22 3.22
live coral tissue/skeleton 1 1 3.77 3.77

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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