Detailed information of FUN_000187-T1 in Siderastrea siderea

Genomic Location: contig_1:3011770...3020389
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21200
all species →		Glyco_hydro_39_CAlpha-L-iduronidase C-terminal domainDomainInterproscan
PF01229
all species →		Glyco_hydro_39Glycosyl hydrolases family 39FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR017853
all species →		Homologous_superfamilyGlycoside hydrolase superfamilyInterproscan
IPR049167
all species →		DomainAlpha-L-iduronidase, C-terminal domainInterproscan
IPR051923
all species →		FamilyGlycosyl Hydrolase Family 39Interproscan
IPR049166
all species →		DomainGlycosyl hydrolases family 39, N-terminal catalytic domainInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR000514
all species →		FamilyGlycoside hydrolase, family 39Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12631
all species →		ALPHA-L-IDURONIDASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004553
all species →		Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compoundsInterproscan
GO:0005975
all species →		Biological Processcarbohydrate metabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_000187-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_000187-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
29.5Max TPM
1.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 22.64 29.53
unannotated 1 1 28.69 28.69
live coral tissue/skeleton 1 1 27.87 27.87

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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