Gene detail

Detailed information of FUN_000204-T2 in Acropora pulchra

Genomic Location: ntLink_6:259382...271167
NR annotation: XP_015768655.1, PREDICTED: tetratricopeptide repeat protein 23-like isoform X1 [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_000204-T2

GGCGGTCGATCATGGAACATACACATTTCACAAGACGAGTTTGATGTGGCTTCAAAATGGAACTGAACGTTCCTTCTGGCGATCATGAGACTGAAAGCAACCTCACCACAGCAAGGTCTGTGAGTGATGCTGAAGACGAAGGGGTCAGCCGTAATTCAAGAGGACAGAGAAATACTATTCCAGAGATCATCCACATTCCATCAGCTTCAGAAAGGAAGCCTGGAATAACTGCAAGACATCGTAAATATTCATCTTCAGAGGAATCTGATGATTATGAAAATACAGAAGATGTTAATGGCTTGGCACCACCTGAAGTTCTCCTTAAAAGCTACAGACGACGAGCGAGGGAATTTAAAAGTATGGGGGATGAAAGAGCTGTGAGTGATTGTGTACGTTGCGTGGCCTTAAGCAGAATATTGCATGGTGACAATCACTGGAAATTGGCCAAAGCACATTCCAAGCTTTCTCAAGCTTACCTTGAACAGGGAGGTATGGCCGAACAAGCTCTCCTTCATGCTGAAAATGCTCGCAATGTCCTGCTTGCAGCAGACACAGCCAAACAGCAGGGGCGTCAGGTTTATGACAGATCTGATGTACTGCCCATTATGGAGTTGATTTATCTTGTGATGGGAAAAGCTCAGCTAGCTTTGAAAAACACTCACAAAGCTGAACAAAACCTTAAAAAAGCAGAGATACTATCACAAGAAAGGGAAGGCAGGGGATATAGTCACCAAGCTATGCAAAGAAGACTTGAAATATCAATGTCACTTGGGCGTGCTTGTTTGAGGGCCAACAAGAGTGGACATGCACTAGAGGCTTTTGAGAAGGCATTGCAAATTACACAGGCACAGTACGGAGATGACAGTGCAGAGCTGATTCCCATTTATCAATGTTTAGCAAAAGCTGAAAGCAGCCAAGGGAATGCATCAAGTCATGAACGAGCTACTCAAGTTCTTCTTCAGGCGCATGAAATCAGTAGAGCAAGATATGGAGAAGATTCAATAGAATTTGCAGAGTCCTCATTTGTGGTGGCGACTAGTTACATTAACAGTTTTGACGGTGACGCCAAAGCAAAGAATTACTTAGAAGATGTGGTCAGGTTAAATATGCAGCACAGGGGCCCTTATCATAGCTCGACTATAAAAGCTCAGGATGAGCTGAGCCGATTGTTAGTCCGTGGGGGTTTTTTAGAGGAAGCTGTATCTTTGCAAAAGTCAGTAGCGGATGCGAAAGTGGTTTTGTACGGCGATCCAAGTCAAGAAGCTGCAGATTGCTACCAAATGCTCGGTAGCATAAGACTAAAACAAGGACGCTTGCAGCAGGCCTTAAAATGGCTGACAAAGGGATATAACATGCTGACTGTGACATTAGGAACTTCTCACAAACGAACAAAACAGATGGGAGATGTCATAAGCCGTGTAAAGAAGTGTGTGAACACGCCTTTTTGAAATTAAGCGATATATTATTTGAATCTCCTAGAAATCGCTTATCTACCTGTGAATTGAAATAACGGACACAGCGCTCTTCGGTGGGGAACTGGTGTAAATGCGGACATCCCTAAGTCACTCGCTATCTTCATTTTTCAATGATTGAATGGGTTATAATTCAGTAAGCCTATCAGCCGAGTGTCTTTTTGTCTCATTTTTATTTCTTTTTCAGATCACCAGATGCTCAGAGGTTTCTCAACTCAGAAGAAAAATTGAAGAAAAGACCAAGATTTACCCAGGTAGTGGGAAGAGCGAAACCACTGGGTTATTCTGCCACCCCAACAGGGGAATAGAAGACAAGATAAACCACAGAGATTCTGCATGGTGATTCCACGTCCAGCAAAGAAGTCAAAGATCATTAATCAGCAAGAATAGGAGAGTGGTGATTTCTACAAAACCAAAACTTCAATTGTTGAAAAGAAAGCTGGAAGAAATTGCAAAAGTAGACGGGTGCAAACATACTATTACCGACCTTTTCGGTGAATTCCAAAACAATTGAAGATTTAGTTCCAGTACGACTTCGAATTTTCGAGTTGCTTGGATCAGGAAATCGAATTTTGTTTGTGGTCACACAACCCGGTTGTGTGTGTCATTCCTCCATTCGCTATGACGAATGGCTAACTCTCGAAACAGTTCAGCTTTTAAATCTGTTAAATCTGTGGCTAGTTTACGTAATCGACTCTGTAATAGTTCAAATTTCGTTTACCACTCCCCACCGACGCAGCATCAGTTTCTTTGGAGACTACTCGCTATCCAGTACCACCCGTGGGCAAGTCATTGCCTTAAAATCTCAGTTTGATCTTCAGTCGAGTTGTGAAAGCAAGGTATTGCTTCTTCTCTAATTTGTTGTTTTATCTATTTTATTCTGAGTAACATCAGAAGCGTTGTTGTTGGCAAAAGAACAGTCGAAATAGACGACACAGATTACATGTAACTGTACCGAGGGTAACCCTTTGTCTGATAATACATAGTTAAACTTGGTAAACCTTTAGTAAGACTACTAAGATCGGTTGGTACTTTATATACGTAAATTTAAGTGTTTCACCATATTTTGGAGTATCCATTCCAGTCACAACCTAATTTGCTATAACACGCAACTCGAATTGTTTTTGCAATCGCGTGACGCTTATAGGATCAGATTGCGTAAAGCGATAGATCACTTACTGATTTAAACATGTTTAGGGTAACGAGGGATAGGTATAAGCCAATTTTAGGGATTTGAAATCAGAAACTCATAAGGGTTGAAACGTGTAACGAGCGTTCACAGCTTCCGAATATTCAGTGCTAAGTACCATATTTGGAAACCCCTCGCTCCAGTCTTTTATGAAAGTAAACACAGCGCGGTCAACAAATGTTGCAAAATTATCGAAATTTGCAAATATGAAACACCTCGGTTTTTTCTCGGAGTGTTTCACCGAACTTTTTCACTCTATTTTTGGACAGCTTTTTGGACTTTTGTGTTTTCGTTTTCGTCTCACCGGACCTCCATTATATTATTTCGCGCGAGAACATTGGTGGTATTGCGTCACGGTGTTCTTGCGAACTGATTGGTTGAATGTTTCTCTCTTGTTGTTCCAAATATGGTACTTAGCAAATTGAATATTCGGAAGCTTGTTTCCCAACACTCAAGGGGCCGTTACACGTTTCAACCCTTATGAGTTTCTGATGAAATACAATAGGATTTACGGTAGTATCACCCAACTAGTGGACTAATGCAAATCCTGCATTTTGATTGGCTACGCTACTATAGGTCTATTATTAATAATCATCGAGTAGCGAAGTTCACCGGTTTTGTAAACCTATTTATTTCGTTTTATTTCCAAATAAATTTATTTTTTTGCTGAATTTATTATTGCTGTTTTCTGTCTGACTAGTTGGGTGATACTAAAACAATTATACCCTTCGCCCTCAAGGGCCACGGATCAATAGCCCATTCGGCTTGTTAATTAGCGCTTGAAGGATGTAACATTGTAGTAATTAAACTCCAAAGCACGTATAAGCCATTGATGTAAGACTAGAATTGAGAACGGAGTGGACATTGAGAGTGTAACATTGTATACAGATTGGAAGAGAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6H7D1	Tetratricopeptide repeat protein 23-like OS=Bos taurus OX=9913 GN=TTC23L PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007411 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042621 all species →	Family	Tetratricopeptide repeat protein TTC23/TTC23L	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14485 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 23	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24934	TTC23; tetratricopeptide repeat protein 23	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.