Gene detail

Detailed information of FUN_000205-T1 in Siderastrea siderea

Genomic Location: contig_1:3180315...3189930
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_000205-T1

TGCAGAGTTAAACCTACAAAGAGTTCAAGCTTCAATGGTCACTGGAAACTACAGACTTTAAGACAAGGACTGAAAGGCAGACTTTTGACTTAGGTTTAACTACTAGATTTAGCAGAATTTGTCTACTTAGGCCTAACCTATTCCACAAGGTAGATGTAGCTTTGATGGTTACAATATCAGCTTTTGTAAGCAATTTTCTTTTACTCTTATATTTATATGATTATGCCTAATGGGGAGCTATGGAGCAAAATCATAAAATACTTCCCCTTATGTGTGTGTAAGGAAAACCATAAACAACATAATATCCTTGAATAAAGTTAATAGTATGCTCCTACTCCACACTCCTGAGAAACTTCCTGagatttttcaggtttttattGACAGCTTCTATTCAgttatataaatattttatattaGTGACAGTGACACAAGCATTTTTTCGGCAAGCCAGAGAGTTTCTTGGCCTTACAAAAGAATTGAGAAACAGCTTTGTAAGAGTGAGGACTTTGCAATATGCCAGTTGTTGTGTAATGAATTGTCATGTACATGCGAACATGCACCTGCAAGTGCATGATGGCATGCATGATGGCCTGAATTTTATGCAAATACATTTCTTCTCCTTTAACCCTTGCCTTGTGCTAAAACCTGATCTTTTTTCCAGTTAGGAAATTCAATTTTGTGGCTGGGATATTAAAAAGTGAGAACTCAATGAGAACAATCTGATGCTCCACTTCTAGCTCATCCGCTGTGTGAGACTGCATGGCGTAGGACACTGGTTTTTCACGGAAACAcaaatttttctatttctttatTAAGAATTAGTTGACACTGTCAATCTGCTTTGTTTGCCTTGAACCCATGGAATATTAAAAACCAAAATGCGAGAACTAGTCAGTCAAATGTTGACCTGTGACAGCCAGAAGTTTATGTGAATCTCGCTGCCTTACTTATCAGCCCCTATATCAATAGTGCAGAGTGTTACAAGACAACAGCAATGTGTCCTTCCGTCTATGAAGCCACATAGCTAATATGAAGATCGcatttaaaaattaatatataatTTTATGTTCTAAGAACTTACAGCAATCACTATCTGCACATCCTAGGTGCATTAGATGTTTATCCCATGCCAAATTAACACTTTTGTCTTCTGAGGCATTGTATGCCAAAAACTGGAACCAATGCCGATCTTTGGTGTGCAGCCTGGTAGACAACCAGATTAATTCTGTGTATTTGTAATAGACCACAGATTTTAATTATGATTCAAGGTCATGCGTGCAGATTCATGCCatcaacattttattttctatgaAAGGAGCAATCTTTATCAGTCTGCAAGGAGTTCTTCACAAAGCGAGAACAAGCTTGTTGCTAGAGTAAAACCTAGTCCTGTCTCAGGTCCACCACACCTCAGAGTTTTAGCTGGAAAATGCTTTTCTTTGATATATAATGGCTATAAGTACGAGTTCTGTCCATTTCATAATGTGACTCAAAAAGAGCAGGCTGTAAGATGGAATGCATTTGCAGGGATCTTAGGTGTGTGGAGAGAATGGGTTATTGTCAACAACACATTTGAAGGCATGCTTCTGTCAAATGGTGACATGTGTCCAGGGGAGAATCCACGCCAAACCAAGGTGTTTTTGAGGTGTGGTGATCACAACAAAGTGTTGTCAGTTGTTGAACCTACTATGTGTTATTATGAAATGAGATTTGAGACTCCTTTGGCCTGCCCTATAGATGCTTTCCTAGTTTATCCAATTCTCAGTCCAGAAGGGCAGAAAGAATGGGAGCAAATAGAAGAGGCTCTATACCGTGAAGAGCTTACAACTCAAGGTTACAATAAGTACAGAAGGAGACTCTTTCAGAAGGAGAACTTCATCCCTCCAGACAGATCCGAGAAGGAGaaacaagaagaagagaaagaggtcATGGCAGCAGTGGAAGAAGTTATAAACTTACATCCAGGAGGCAGCAATGCACAGAAGAATTCTACCTTCCATTCAAAAGAACAGTGTGCTAAGGCTTACAGTGATCTCTTGGCTGAGGTACAAAGACTAAGGAAGCAGCTTAATATAAGTAATGAACCAGCTCCTTCAAACAACAGTCTACGAAGGTCAAAGAATGATCCAGAAGAATTGATAAAACTTTCGCAGAGCAATGTGACAGATAAACTTAGATCCTCTGTATCCAATAATTTGCTACCAACTTTGAAAGGTGAAGTAGGGGATAGAAGAGTGACAAAGAATAAAACATCAGAAGCTACCAGACATGACAAGCAGGACAAATCACATGTGAACAATTTACGAGGTGACCCAGGAGCTGTTATGAATCGTATTATCAAGTCAGGTGACAACAGAGAGAGGAAACATGTAAAGACGAGACTAAACAAGGGTGGAGAATTTTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13015 all species →	PRKCSH_1	Glucosidase II beta subunit-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009011 all species →	Homologous_superfamily	Mannose-6-phosphate receptor binding domain superfamily	Interproscan
IPR036607 all species →	Domain	Glucosidase 2 subunit beta-like	Interproscan
IPR039794 all species →	Family	Glucosidase II beta subunit-like	Interproscan
IPR044865 all species →	Domain	MRH domain	Interproscan
IPR010506 all species →	Domain	DMAP1-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12630 all species →	N-LINKED OLIGOSACCHARIDE PROCESSING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_000205-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.