Detailed information of FUN_000246-T1 in Siderastrea siderea

Genomic Location: contig_1:3806091...3808704
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01555
all species →		N6_N4_MtaseDNA methylaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002941
all species →		DomainDNA methylase N-4/N-6Interproscan
IPR029063
all species →		Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan

 PANTHER
No PANTHER signature was detected for FUN_000246-T1. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0008170
all species →		Molecular FunctionN-methyltransferase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K00571E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific)EC:2.1.1.72
Prokaryotic defense systemko02048deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_000246-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
44TPM > 0
7Conditions
2,072.2Max TPM
303.3Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 8 275.48 1,407.33
holobiont · low.pH Control.temp 20 5 145.39 870.35
holobiont · control.pH_high.temp 20 12 435.70 1,413.31
holobiont · control.pH Control.temp 19 13 449.37 2,072.17
Whole organism 4 4 15.89 26.24
unannotated 1 1 33.23 33.23
live coral tissue/skeleton 1 1 12.46 12.46

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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