Gene detail

Detailed information of FUN_000329-T2 in Acropora pulchra

Genomic Location: ntLink_6:1590414...1594767
NR annotation: XP_015768429.1, PREDICTED: centrin-3-like [Acropora digitifera]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_000329-T2

ACGCGTTGTTTCCCGAAGCAACAGCCCGCGTGCAAAAAAAGTGAGAACGCAACTGGAAATACAAACGAAAGCTCTTAACAAACATCTGCTAGTAGAGGAAATGAGTCTATCATTAAAGACGCCGGATTTTAGCAAAGGAAGGGGTGCAAAAGGCAAACGACGAGAGCTGGGGGAAGAGCAAAAACAAGAAATCAAAGAAGCGTTCGACCTTTTCGATACAGATAAAGATAGAGCAATTGATTATCACGAACTCAAGGTGGCAATGCGGGCTCTTGGATTCGATGTGAAGAAAGTTGATGTTCTAAAAATCATGAAAGATTATGACAGAGAATCTACTGGGAAAATTACATTTGATGACTTCAATGAAGTCATGACTGACTGGATGTTAGACAGAGATCCACAAGAGGAAGTTTTCAAAGCATTCAGATTGTTTGATGATGATGACAGCGGCAAAATAAGTCTGAGAAATCTTAGGCGAGTAGCAAGAGAACTTGGTGAGAATATGACAGATGAGGAGCTTCGCGCAATGATTGATGAGTTTGATAAAGATGGAGATGGCGAAAGTGAGTTATTTCTTCTACCAAGTAGAGTACATTGAAAATAGGAAAATTCTATAATATTCCTTAGCGTCTGGAAATGGCTTGAAAGCTTGAACAAATAAATAGTGTTTGAACAAGCTTTCAAATGAGTAGGGTTAAAAGTCATGAAGCTATTATTATTATTGTGATGATCAACCTGAATCAGTGTTTCAAATAATATTATTTGTCTTATTGATGAGTAAAATTATTACTGTTAGGAAACATTCATTTTTTAGGAGGGGGGGAGGGCAGAGGAATTCAGGGGAGGGTCATTACCTTTTTACCTGCCCAAAAAGGGAGGGTCAGCATAAATTTGACACAACAAAGAGGTAGGTCACTATAAATTTTACTGCTTTCCAGGGGAGGGACACATTTTTTAACAATTAATAATATAAAGGGAGGGCTGGCAGATTTTACATTCTTGCTCATAGGGATTCCTCCAACCCACCCCCCTTTCTAAAAAATGAATGCCTCCTTATGTAGCTCGAAACTCAGTTTGGTGTTGAACTGGAAATTTCCCTTGGGAGCAGGTTGCCACAAGAAGCTATGGGTTGCTATAGTCTGGTCAACTCTTTTCATGTTTATTATTGTCATTGTTATCAATTCTGTTAATACTATTATTATTATTATGACCGTAGTGTCAATGGTTTGGAAGTTTTGTGCATTTAAGATACCTGTTATGACTGCATAAATTGTCAACCTAGCTAGTATGAAAGGTTTTGAATTTTATTGTTGTAAAAGCTGTTTAAACATCTTGAACTGTAGATAACGAGTCATCAAAGTACTGTACCTGGAGTAACTCTGTGCAATGTAACATTGTGTTAGCCATCTTTGGCCTGGGCTGTCAGGCCAAGTTTCTACCAGTGAGGCAAGCAATACACATAAGCGACAAACTGTTGTTGATTAGTGTACAAGACGGAAGAGTTGAAATCTTTTACTTGATTATTACCTGACAAAGACCGCACAATCGCTTGCGGATTTCAAACATAAACTTGCCTCCTCGCCTTCCATGCCTTCTGCTTGATCGCACTGATTCTATGTAATATGTATATAAATATTTATTTTTAATACATCCATACATACATAACTTATTCTAACGTGTTTGCCTACGCCCCACCTGGAAACCAGCTTTTGTTGTGTGTGGCCAGCGTAGTTAAATAAAGTTGTATCATCTATCTATCATCACCTTGTCCTTAACTCAATCCTTTTTCTACCAGTTTGCACTTGAAGTATAGTAGTGATGAATTTCCATTTTATCTTTTAGTTAATGAAGAGGAGTTCTTGGCCATTATGACAGGGGACACATGAAATGAAGATACCTCTTCAAAAAGCTGTACATTTTGTTCAAAATCTCTTCAGACAAACATTGTATTTTTGTAAAGGACCAACTCAAGCCATGCAATTATGTACTACTAAAGATGCTGTAATATACATTTTGTTTTATTGAGGGTAATATTACATCAATAATTATTATTTTTATCTTCTGTCTTGTGATGCAATAGCAGTTAGCAATCAGTAAGTTCCAAATAATATCAAACAGCAATTCCTGGGATTCAGTTTACAGACAAGTTCTTGCTGTATGCTTCTGACTCATGTGAACAATGCTAAGTGCTTCACCCCACCCTAGCGGTTTCCTGTAATCACCCTTACATATTCTTAGAAGAGAGTAGTGTGATACAGATTTCATCATGGAGACCCCTCACTTGAGTATTTTTGTTTTCCCAAATGTGAAATGATTCAATAATATTATTATTGTCTGCTTTGGTCATTTGGAAGAGTTAATGCAAGAATGAACTGCTCAACCTTTCCGCAATAAAAAAAAAAATTCTGATGAGTAGTGTCATGCCACCTACATGACTAGGGCACTTAGGAATGCAGTCCATTCCCTGCAATAAGTGCAATCAATAAAACGAAGAGAGAACTGCATCTTTCTATGGAACAGAGGAAGATATTTATGGCAGACAGCCAAAGTCTTTATATTGGGAGCATATGGTTGTTCCTCTAGGAAAAGAGACCTTTCCCAAACTGTGTGAGGAATAAAATGTCTTGTCCCCATAGTCCTGTACCACGTGGTCTGTACAGAAAACAAATGAGCATGCCAGGATGTCTATTATGGGGTGGGGAAAGGTAGGGTGTTTCAACTTGAAAAAATACCACAATTTGCAAGGAAGAATATTTCTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O15182	Centrin-3 OS=Homo sapiens OX=9606 GN=CETN3 PE=1 SV=2
O35648	Centrin-3 OS=Mus musculus OX=10090 GN=Cetn3 PE=1 SV=1
O74435	Cell division control protein 31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cdc31 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001313 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR050145 all species →	Family	Calmodulin and Centrin Calcium-Binding Families	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23050 all species →	CALCIUM BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005815 all species →	Cellular Component	microtubule organizing center	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0030474 all species →	Biological Process	spindle pole body duplication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16466	CETN3, CDC31; centrin-3	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.