Gene detail

Detailed information of FUN_000521-T1 in Acropora pulchra

Genomic Location: ntLink_6:3932084...3939414
NR annotation: XP_029192054.2, glycine betaine transporter OpuD-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_000521-T1

ATGGAGGCTGAGCAAAACTTTGCGGAGAAAGTCCGCTGGTTTCGATTTAAATTGAATTGTGGGAGATTTGCGTTCAATATTCGATTTAACCCAGTGGTCTCCATTCTATCAGCGGTGGCCATATGGGCTTTTGTGATATGGTGTTCGGTGGATTCGAAAAGAGCGGAGACAGAGATGACAATTTGGATGCAATGGATCACGCGCACCTGCACCTGGTTCTATGTTGGCTCACTAGACGTCTGGACAATTTTCGTTATAGTGTTGTACTTCTCCAAGTATGGCAACATGAAACTGGGAAAACCTGACGACAAACCGGATTTTGGCGACGCTACATACTTTACGATGCTATTCGCTGCCGGAATCGGCGTTGGTTTGTTCTACTTCGGCGTTGCTGAACCAGTTTTTCATTATGCTTCAACAACTAGCTACAAGTCAGGAAATCGTTATTATGGCAGGTATAACGATAATCAAAGAGCTCAGGATGCCATGAATTTGACTCTCTTTCACTGGGGGATCCATGCTTGGACCGTCTACGTCATCGTTGGCCTTCTCCTTGCCTTTGTCGGTTTCAGGAAAGGTCTTCCCATGACGATCCGTTCTTGCTTATACCCTCTGGTTGGAGAAAAGATCTTCGGTTGGATTGGCGATGCAATAGATATCCTATCAGTGTGTTGTACGATGTTTGGAGTTTGCACCAGTCTGGGCCTTGGCTGCATCCAGCTGAACACGGGCTTCAGTCGAGTCTTTGAAAAAATCGAATTCTCAAAAACCAACCAAATCATCATCATTTGGTGTGTAACCGCGTGTGCCACTGCCTCGGTGGTCAGTGGCCTAAAAGTAGGAATACGACGACTGAGCGAGATCTGCTTTACTATCGGCATGTTCATTATGCTGATTGGCTTCTTCTTCAAGGACACCGAGCATATACTCAATGTCTATGTTCAAAGCATAGGGTACTATATGCAGAATATCGTACAACTTGGCTTCCACACAGATGCGTTTGCTCAACTCGGGAATGCGCCAGATGGAAAACAGGCCCAGTCTTGGATGAACGATTGGACCATCTTCTATTGGGGTTGGTGGATCGCATGGTCTCCCTTTGTTGGAATGTTTATCGCCAAGATCTCAAAGGGAAGAACCATCAAACAATTCATAAATGGTGCAATGACAGCTCCAATTTTGTATACTTTTCTGTGGTTTTGCATCTTTGGCAGCGCGGGCTTGAAAATGGAAAGAGAAGCAGAGATAGCAAATATCACATGTGACTCTCTTCTTGGAGGTAAAAATAGTAAAGCATCGATGAATGGATTGTACCGGCTTTCATGCAGACAAACCAACGAGATGTGGTTTGACGTGATGGACCAATATGGCGACCTTGGGGTGTTCCTCTCTGTCGTGTCACTCATTGGAATCATCTTCTACTTCGTGACCAGCTCAGACAGCGGTTCCTTGGTGATCGATTGTCTTTCTGCAAATGGTGATCCGGACCCTCCCATCACCCAGCGTGTATTCTGGGCTTTAACAGAAGGCGCATGCGCCACATCCCTGCTCTATGCTGGAGGTTCCAGCGGACTCAAGGCTCTCCGTTCGATGTCCATAGCATCGGGTGTACCTTATGCTGTTTTGCTGTCCTTCATGTGCGTGTCATTGTGGAGAGCAGTGAAGATGGAAGCGGGCGACCTCGATCAGCATGGTCCACAGTTCAGTACAGGCCTTTTAGACAGTTTAGGTTCGCCAACACTCTTAAACATCCGTAAAGTCCTAGTGGCTGTCGTTGCACCTTGGTATCCGATGGGCAAAGCTGCTTATAAAATTGGTGGATCAAAAGACCGAAAATGGGTCTACATGCTAATTCTAGCAGCTCCATTTTATCTCTGGATTTTACTGTTGAGTCTGGAGCCTGTCGTTACTGGCATATCGTACGTTGGTTGGACAGTGTTGTTTGGGTTCTTTGCTAATGCCACAGCTATTCGCCACACCATAAGAGAAAAGTACAACATCTACGGAAACATGGTCGAAGATTTCTTTGCAGTGATGATCACCTATCCTTTTGCTGCAATTCAGATGGAGCACCACGTCATTCACATGGATGAAATCGACCTGAGTGCCGTAAAACCTATAGCAAATGGTGTGACCCATTCTGACATCCCCTTGCATGAAGTTCATACCAATAGCATCTCTGTAAGCGACAGAAGTATTAACATAAAGTGTGCTAATGGTTCGATCTGCCCTTTAAATGATGAAAAAGATGTCAAGTCAGAGGTTGGCCAACCTCTTCATTTAGTAGCTAATGGTATCCACACTACTGCTATAAACCATTCTTCTTTTGATGAAAAGTTATGA

Transcript

FUN_000521-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A0B5RUB0	Trimethylamine transporter OS=Myroides profundi OX=480520 GN=tmaT PE=1 SV=1
P54417	Glycine betaine transporter OpuD OS=Bacillus subtilis (strain 168) OX=224308 GN=opuD PE=1 SV=1
P9WPR6	Uncharacterized transporter MT0942 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT0942 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000591 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02028 all species →	BCCT	BCCT, betaine/carnitine/choline family transporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018093 all species →	Conserved_site	BCCT transporter, conserved site	Interproscan
IPR000060 all species →	Family	BCCT transporter family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30047 all species →	HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0071705 all species →	Biological Process	nitrogen compound transport	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006810 all species →	Biological Process	transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_000521-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.