Detailed information of FUN_000574-T1 in Acropora pulchra

Genomic Location: ntLink_6:4476022...4495338
NR annotation: XP_029200742.2, TPR repeat-containing protein DDB_G0287407-like isoform X1 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q54KD0TPR repeat-containing protein DDB_G0287407 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0287407 PE=4 SV=1
P97499Telomerase protein component 1 OS=Mus musculus OX=10090 GN=Tep1 PE=1 SV=1
O08653Telomerase protein component 1 OS=Rattus norvegicus OX=10116 GN=Tep1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007295 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13374
all species →		TPR_10Tetratricopeptide repeatRepeatInterproscan
PF13424
all species →		TPR_12Tetratricopeptide repeatRepeatInterproscan
PF13181
all species →		TPR_8Tetratricopeptide repeatRepeatInterproscan
PF05729
all species →		NACHTNACHT domainDomainInterproscan
PF13271
all species →		DUF4062Domain of unknown function (DUF4062)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011990
all species →		Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR019734
all species →		RepeatTetratricopeptide repeatInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR051191
all species →		FamilyDDB1-CUL4-associated factor 12Interproscan
IPR007111
all species →		DomainNACHT nucleoside triphosphataseInterproscan
IPR025139
all species →		DomainDomain of unknown function DUF4062Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19860
all species →		DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0080008
all species →		Cellular ComponentCul4-RING E3 ubiquitin ligase complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_000574-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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