Gene detail

Detailed information of FUN_000614-T1 in Dendrogyra cylindrus

Genomic Location: contig_1:9151530...9156082
NR annotation: CAH3021682.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_000614-T1

ATGTTTGTCGAGGAATATCTTATAGATGAAGTGTGGTTAAACCTGCAAGACCAACACTTGAACAACAGCTTACTTGTTCTCTTTGCTCAAATACGTACAAGAAACCTAAAATTCTGGCTTGTTATCACTCATTTTGCTGCGAGTGCTTGGAGAAACACGCAACAGCGAACCAAAGAGACGGAAAATTCAACTGCCCAGAGTGTGAAACAGAAGTTTTCATCCCTGATGGACATCGGTTCGATGATCTGCCGACGAGTTTTCATCACTAACCGCCTGTTAAACTGCCTGGCCATTCGCCAGAGCGAGGAAGGAAACGAGCAGAGATGTACCAAATGCAACTTGAACAAGGGACCCGAAATCCATTACTGCTTCGAGTGTGGGAACTTTCTATGCAACGAATGCGTCTTGAAAACCATTTCCAAAGGCCACAGAGCTAAAGCCGTCGTCAGGGACTTTGAAGTCGAAGATTACGGAGATGTGTTAAATACAAAGTCGTTTTGCCCTGTAAAGTTCCACGAAAGAAAATTGATGGAGTATTTCTGCCGCGAGTGCAAAAGGTGCATTTGCCAATCTTGCATCAACACAGATCACAAGAACCACAACATCGAGCTAGTTGACAAAGTCTGCGATGAAGAGAAATCAGAGTTACTGGCGAGCGCTGAGTTAGCTAAAGAGAAACAAAGAGCCTTCGAAGAAGTGATCCAGCAATTTGAACTGGCAGCTTCTGAGCTGGAAGCTAATATTGCCGCCGCAAAGCACGGAGTTTCTGAAGCAGCTGAGCAGATGATCGCCGCTATTCGAGAGCGAGAGCGTGAAGCCAATGATGCCCTGGAAAGGACGCAAGCGTCAAGAACCGAGAACTTGGGCGGTGCAAAGCAACAGGTGAAATCAATTGCAAAACAGATTCACCAAACAGCAGAGTTCACTAATAACTTGGTGCAAGGAGGTTCAACCAGTGGCATCATGTGGAACAAGGCAAGTTTGGTGCAGCGATTTGAAGAGCTTTGCAAATCGAAAGTGCCATCACTTCCGGGCTATGAGGCCTTTATTACATTCTTTCCGACTTGCGTACCTGAGAGTTTAATGCTGGGATTCATCGCGTGGAAAACGGCCTCTTGCGAGGGACTGTGTCAAACTTTTCAGGCTGGTTTAGAGGCAGAATTAATAATTCGCGTTCACACACCAGCAGGGGAACTATGGCATAAGAATCTTCGAGATCAAGTTGAAGTATTCGTGGAACCCGCTGAAGAGGTGGCAAGTTTGATTATTCGTAAAAAAGACGATGGAAATTTTCAAGTGAAGTTCACACCGAAAATACCCAACACCTACACCATCGACGTCAAATTGAACACTGTCACGCTTGCTGGCAGTCCTTTTACGGTCCAAGTGCAGAAGCGAAGATTTTCTGTCGTTTTGGTAAGCGAGCTGCATATGTCAGGAGGTCGAGTAAAGCGACCCCGCGGAATCGCTGTAAACAAGCAAGGGGAAATTGCAGTAACGGATTACGAGGGTCATTGTGTTGCCTTTTTAGACGATGCTGGAAGATTTATTAAGAAACTGGGCAGCGAGGGAGAATCTGAGGGACATTTTAAGCATCCCTCTGACGTCACATTTCTGAACGATGACGAGATACTTGTCGCAGATGAATGGAATCACCGAATACAGCAGTTTAACGTGCGCAACGGAAATGCCATAAAGATTTTCGGGAGAAAGGGCGCGCGAGACGGAGAGTTTCAGAACCCACTCAGTGTCTGCACCGATGAGCAGGAACAAGTTATTGTCTCCGACTGGCTAAACGACAGAATACAAATATCAACCGCAAACGACCAGCCATTGCTTACAGTCGGAACGAGTGGACCACGACACATCAGTCGCCCACTGAGTTGTACCGCCCACAAAAACAAGCTTATCGCGAGTGATGGCGTCGAGCACTGCATAAAAGTTTTCGACAAGTTATGCCAGTTTCTGCGCAAGTTTGGAAGGGAAGGCAATGCTGACGGATGCTTTAACAAGCCTTCAGCCGTGTGCGTGGACTGCTTCGGTAATCTCCTCGTTTGTGATAGCAACAATGGCCGTGTACAGCAGTTCAACATAGACGGCCGTTTCACGGGAAAGAGTTCCGGCGTTCTGCGAAGTCCTGTAGGGATTGCTGCTACCCCCGCTGGCCGTATCCTCGTCACTGACGGAGAAGCCGGCAAACTTTATTGCATAAATTAA

Transcript

FUN_000614-T1

Protein

Uniprot

Uniprot term	Description
Q1PRL4	E3 ubiquitin-protein ligase TRIM71 OS=Gallus gallus OX=9031 GN=TRIM71 PE=2 SV=1
D3ZVM4	E3 ubiquitin-protein ligase TRIM71 OS=Rattus norvegicus OX=10116 GN=Trim71 PE=3 SV=1
Q2Q1W2	E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens OX=9606 GN=TRIM71 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10680	PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan