Gene detail

Detailed information of FUN_000618-T1 in Acropora pulchra

Genomic Location: ntLink_6:5133888...5151002
NR annotation: XP_029210798.2, nucleolar complex protein 3 homolog [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_000618-T1

ATGGCTAGAAAAAAGAGACCCAAAGAGACTAAAAAAGTGAGAAAGGCTGTCACAAACGACCAAATGGAGAACGGGGATGTTGAAATCCGAGAAGAGGATGTACTCGATCCCGAAGATTTTGAATATTTTCAAGATATGGGGAACTCTGCATTTATACAAGGAATAGCGATAGGAATGCCTGCCATTGGAAACAAACGGAAAAGAAAACCAGGAGTCGGTGCGGAGGATGCTGAAGCTGAGTATGAGAAAAAGCCGCGAGTAGGACCAACAGTGGAGAATCCAACTGAGAGAATACTACTGCCAATCAAGAGTGCAAATAACATTATACAAAGAAAAGAAAAAATTGTCCCTAAAGACACAGAAGAAGTCAATTCATATGAACCAGAACCAGAAACTGTCCAGCAAACCACAATTTCCCCTACACCTCCCCCTATGATAAGTATGGTGGAACTGTTCAATCAAAGGCAAGAGAAGCTTGAAAAAAGAAGACTTAGGATAGCCGGGCTATCTAACAGAATCTTGGAGAACCCTCAAGAACATATACCTGAGCTACAGGAACTTTGTCGGTTATGTGATGAAAAGGACGTTGATGTTGAAATAACCACAAGAAAACTGGCAATGGTCTCTCTGTTGACTGTTTTTAAGGATATAATTCCGGGGTATCCAATAAGGGTTCCTACACAAAAGGAGAGAGCTGTTAAATTATCAAAAGATGTCAAGAAATTGAGAGACTTTGAAGATGGTCTGTTGAAAAGCTACCAGAAATACTTGAAAATCTTAGAGGTGACTGTACAAGAGGGTTTGAAACTCCAGACAGCAAAAGTTTCTAATGGTTTACTGCAGAAGAAAGTTGCATCTGAGGGTCTGATAATGGTTGCAGTCCAGTGCATGTGTGACTTATTGACCTCTCTGCCTCACTTCAATTTTCACACAAACTTAATGGCCGTACTTGTACCAAGAATGAATGATAAGTGCCTCGATGGCCAGATTTCAAAACAATGCTTTGATGCATTTGTCAAACTGTTCAAACAAGATTCCCTTGGAAAAGTGTCATTAGAGGCTGTGAAGTTTATCAGCAAGTTTGTGAAGCGTAAGCAATTCAGAGTCCAACCTTGTGTGTTGGAAACGTTTTTACACTTGAGGATTAATCCACTTGTCATCCAGGCGCTTAAAAAGAGCAATGAAAAGAAAAGTGTAGTGGAACTGAAACTTGAGAAAAAAAAGCATAGGATAGAAAAGAAGCTGAAAGGAAAGATGTCTAAGAAAGAAAAAAAGCGAAGAAGAGAAATGAAAAAGTTAGAAAACGAGCTCAAAGAAACAGAAGCTGTGGAGAGCCACCAGAAGAAAGCAAAATTGCAAACAGAAATCCTCAAGTTTGTGTTTGTTACGTATTTCCGTGTATTGAAGACCATTGGCCACTGTCCTTTGTTGTCGCCTGTACTTGAAGGACTCGCCAAGTTCGCTCATCTCATCAACATTGAGTTCTTTAACGATCTTATGGCTGCAATACAGTCACTGTTGAACAACGAGAATCTAACCCTGAGAGAAACTCTTAACTGTGCTCTGACGGCGATTAAGATTCTATCTGGCCAAGGCGAAGCGCTCAATATTGATCCTCGTGGCTTTTACAACATGTTGTACTCTTGCCTTCTGCAAGTTGATGCGGGTTCCAACAGCCAAGACGCCTTTATCGTGTTGCAATGCCTTGAGGAAATGTTAAAGAAAAGAAGAAAACAGGTTCCTAGTCAGAGGGTGTCAGGTTTTGTTAAACGTCTTTGTACAGTGAGCTTACACTCGCAAGCCAACGGTGCGCTGGCGTTTTTGTCCTACGTCAAGTCATTTCTTCAGTCTCACACCAAAGTGCATGCCTTACTCGACAATGAGAGCATAGGCATTGGTTTATTCAGACCCGATGTAAATGACCCGGAGCTGAGCAACGCGGATAGTTCGACAGCTTGGGAACTAGCTCTGTTGAGGACTGGACACTATCACCCTTTAGTTAAAATGATTGCCCATCACGTTGCTCAAGGGGCGCCGAGCAAAGGACACTTTTCTGCAATTATGAGAAAGTCTCCAGAGGCGTTGTGGCAAGAATACGACTCCTCCGAAATGAAACTCAACCCAGACATGGATAAAAATACTCCGATGAACAACAAGAAAGTTCTTTTTAAGAAAGTGAGACACATGAGTGCTGGAGGATGGAAAATCGCTGATATGGAGTCGGATGTGACAAATGCACTGGACTTTACTGAGAGAAGGGGTTCAAGTGCAAAGTTTACTTTGGCTTTGAGGCAGGCAGCGAGATAG

Transcript

FUN_000618-T1

TTCCAAATTCAAAATGGCCGATGGTACGTTGTGAATTAAGAGCTTCTTCACTTTTTGTGTAGAGTTTTTTTTCCTAAAACACCGATGGTTCGTAGTCATGGCTAGAAAAAAGAGACCCAAAGAGACTAAAAAAGTGAGAAAGGCTGTCACAAACGACCAAATGGAGAACGGGGATGTTGAAATCCGAGAAGAGGATGTACTCGATCCCGAAGATTTTGAATATTTTCAAGATATGGGGAACTCTGCATTTATACAAGGAATAGCGATAGGAATGCCTGCCATTGGAAACAAACGGAAAAGAAAACCAGGAGTCGGTGCGGAGGATGCTGAAGCTGAGTATGAGAAAAAGCCGCGAGTAGGACCAACAGTGGAGAATCCAACTGAGAGAATACTACTGCCAATCAAGAGTGCAAATAACATTATACAAAGAAAAGAAAAAATTGTCCCTAAAGACACAGAAGAAGTCAATTCATATGAACCAGAACCAGAAACTGTCCAGCAAACCACAATTTCCCCTACACCTCCCCCTATGATAAGTATGGTGGAACTGTTCAATCAAAGGCAAGAGAAGCTTGAAAAAAGAAGACTTAGGATAGCCGGGCTATCTAACAGAATCTTGGAGAACCCTCAAGAACATATACCTGAGCTACAGGAACTTTGTCGGTTATGTGATGAAAAGGACGTTGATGTTGAAATAACCACAAGAAAACTGGCAATGGTCTCTCTGTTGACTGTTTTTAAGGATATAATTCCGGGGTATCCAATAAGGGTTCCTACACAAAAGGAGAGAGCTGTTAAATTATCAAAAGATGTCAAGAAATTGAGAGACTTTGAAGATGGTCTGTTGAAAAGCTACCAGAAATACTTGAAAATCTTAGAGGTGACTGTACAAGAGGGTTTGAAACTCCAGACAGCAAAAGTTTCTAATGGTTTACTGCAGAAGAAAGTTGCATCTGAGGGTCTGATAATGGTTGCAGTCCAGTGCATGTGTGACTTATTGACCTCTCTGCCTCACTTCAATTTTCACACAAACTTAATGGCCGTACTTGTACCAAGAATGAATGATAAGTGCCTCGATGGCCAGATTTCAAAACAATGCTTTGATGCATTTGTCAAACTGTTCAAACAAGATTCCCTTGGAAAAGTGTCATTAGAGGCTGTGAAGTTTATCAGCAAGTTTGTGAAGCGTAAGCAATTCAGAGTCCAACCTTGTGTGTTGGAAACGTTTTTACACTTGAGGATTAATCCACTTGTCATCCAGGCGCTTAAAAAGAGCAATGAAAAGAAAAGTGTAGTGGAACTGAAACTTGAGAAAAAAAAGCATAGGATAGAAAAGAAGCTGAAAGGAAAGATGTCTAAGAAAGAAAAAAAGCGAAGAAGAGAAATGAAAAAGTTAGAAAACGAGCTCAAAGAAACAGAAGCTGTGGAGAGCCACCAGAAGAAAGCAAAATTGCAAACAGAAATCCTCAAGTTTGTGTTTGTTACGTATTTCCGTGTATTGAAGACCATTGGCCACTGTCCTTTGTTGTCGCCTGTACTTGAAGGACTCGCCAAGTTCGCTCATCTCATCAACATTGAGTTCTTTAACGATCTTATGGCTGCAATACAGTCACTGTTGAACAACGAGAATCTAACCCTGAGAGAAACTCTTAACTGTGCTCTGACGGCGATTAAGATTCTATCTGGCCAAGGCGAAGCGCTCAATATTGATCCTCGTGGCTTTTACAACATGTTGTACTCTTGCCTTCTGCAAGTTGATGCGGGTTCCAACAGCCAAGACGCCTTTATCGTGTTGCAATGCCTTGAGGAAATGTTAAAGAAAAGAAGAAAACAGGTTCCTAGTCAGAGGGTGTCAGGTTTTGTTAAACGTCTTTGTACAGTGAGCTTACACTCGCAAGCCAACGGTGCGCTGGCGTTTTTGTCCTACGTCAAGTCATTTCTTCAGTCTCACACCAAAGTGCATGCCTTACTCGACAATGAGAGCATAGGCATTGGTTTATTCAGACCCGATGTAAATGACCCGGAGCTGAGCAACGCGGATAGTTCGACAGCTTGGGAACTAGCTCTGTTGAGGACTGGACACTATCACCCTTTAGTTAAAATGATTGCCCATCACGTTGCTCAAGGGGCGCCGAGCAAAGGACACTTTTCTGCAATTATGAGAAAGTCTCCAGAGGCGTTGTGGCAAGAATACGACTCCTCCGAAATGAAACTCAACCCAGACATGGATAAAAATACTCCGATGAACAACAAGAAAGTTCTTTTTAAGAAAGTGAGACACATGAGTGCTGGAGGATGGAAAATCGCTGATATGGAGTCGGATGTGACAAATGCACTGGACTTTACTGAGAGAAGGGGTTCAAGTGCAAAGTTTACTTTGGCTTTGAGGCAGGCAGCGAGATAGCACCGTGACAAACCTCTTAAGAATAAAAAAATTCAAGCTTGGAATGGGGAACCTTTACTCTTGCAAAAAAGAAAACAACAACAAAAAACAAAAAAAAACACATAGTAACCCTAAATCGGAGCGGGTAAATGTTGACTATTATAAATTTTTTTGAACAATTTTGAAAGAAGGTCTTAGCATCAAAGAAGAAACGATTCTAGGTACTGCGTTTTAATTTGAGACATCCCGGGCAGCGCCATCTTTAGTAGCGGTGATGTCATAATTCAACTGACAAATACCCAGAAGGCACCTGGGTCATCTAATGTTGCTACGAATGAAATATCGAACAGTGAATAATGGTACTGGTATGGGACGAAACAAGAAGTAATTCTTAGTAATGGTACCAATTAATCATAAAAACACGAAGTCCTATTACCAATTAATCATAAAAATTACAATTTCCGAGAAAAGAAAAATAGCCAAGTTATGTGGCAAAGGGAAATTTTACATTAAAAAACTGACAAAGGATGCATAAATTTAGGAGTTTGTGCACTGTTTCTATAGTGATTGAAACCAAGGTTGTGATTGGTTGATTTTAACTACAACTTTGAATGTTATTGGCTGAATTTAATTGGTTCGTTTAACTGTCCGATAACA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XGZ8	Nucleolar complex protein 3 homolog OS=Xenopus laevis OX=8355 GN=noc3l PE=2 SV=1
Q6DRN3	Nucleolar complex protein 3 homolog OS=Danio rerio OX=7955 GN=noc3l PE=2 SV=1
Q5R952	Nucleolar complex protein 3 homolog OS=Pongo abelii OX=9601 GN=NOC3L PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003711 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03914 all species →	CBF	CBF/Mak21 family	Repeat	Interproscan
PF07540 all species →	NOC3p	Nucleolar complex-associated protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005612 all species →	Domain	CCAAT-binding factor	Interproscan
IPR016903 all species →	Family	Nucleolar complex-associated protein 3	Interproscan
IPR011501 all species →	Domain	Nucleolar complex-associated protein 3, N-terminal	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14428 all species →	NUCLEOLAR COMPLEX PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006270 all species →	Biological Process	DNA replication initiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14834	NOC3; nucleolar complex protein 3	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.