Gene detail

Detailed information of FUN_000883-T1 in Acropora pulchra

Genomic Location: ntLink_6:5616702...5632214
NR annotation: XP_029194429.2, uncharacterized protein LOC114960275 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_000883-T1

ATGACATTTGCTTTCCATCTCCTCATTGTACTGTTCGCAGGCTGCTTCCTGGGAAGGTACTCTGAAGGGTTCAAGAATGGGATGATTAATCAACACATGCGTTTTCGAAGATTTTTCTTTCCCCCGTTAAAAGGATATGAATATATCATTCAAGTTAAAGCTGCAAATCAGAGGGCAGCAGCTAGAGATTCAAATTTGTTCCTCGATATTTACGGATCCAAGGGAACAGCGTCCAAATTAAAACTTGGTAACCTCATGACATTCAACGACTTCCAGAGTGGAAAGACTGACCAATTTAAAGTGAAGTTACGCGACCTTGGTGAAATTAGAAAAATAACACTGGGACATCACAATTTTGCACGGAAACCTAATTGGTATCTTGATCGGATTACAATTAAAGCACACGACGGAAATAATTACAAATTCATTTGTAACTGCACAATTATGAAGATAAAACAACTGTTCCCGGAAGGAAAGAAGCCGCCAGTTGTCCCAGCTCCAGGTGGCTGTGGTGGCATTTTCACAGACGCATCTCACTGTTGGCCATTTGACGACGAAATAGCCGAAGAATCCCCTGATTTAAAAGGCTCTTCTCCCGCTGAGTTAGAGGACGGAGCAAGAATAGCCGACTCTGTGGCCAGGGTATATGTAGCGTCTACACTCGATAGGGGAAGTTGGATTAATATGGGAAATTTTAAAGGGAAGTGCATCAGCGAGCCTAATTTGTGCAGGACGGGTGTTACCATGATCTTTTGGGCAAACATAGAGACTTCAGAAATTAGTGCAGACCCAGCGACGTCTCAATACGTGTTTTCAAGCGGTGGATACGACAGAAGGTCTCAAGGGTTCTCCTTCTTTCACAAGAACAACAGTTACGTGTTACAAGTAGTCAATGGCAGGAAAAAATGGAGAGAAGAAATCCCACTTTCAAGGATGCCATCAGATTGTTGGTTTTCGTTCGCGTTTACGTGGAGTAAAGCTCAGGGAATGAGACATTTTATCAATGGCAAGCCAGATGGTCAACCAACTCTTCAACCTGTTGATGCAAATGTTCAGCATGTAAACCGTTTCCACGGCTTTAGAATTAGTAAACCAAACAGCAACAATAATATTGAAGAGATGATGCCGATGAAAATTGATCAGTTTGTTACTTGGGGTAAAGTTCTATCAGAAGCTCAGATCCTACAAGCCTTCAAAGAGGGTGGCGAAGCTTCATGCAACAAAGGAAACGCCTCCAATTTGCAAGCTTGCAATCCTACTCCATGCTTTAATGGTGGAACTTGCAAAATCGATGTCGATGAACCCAGAGGCTACCGTTGTGTCTGCCCTGAGGGCTTCGCCGGACTTCAATGTGAACTTTACGAGGAAGAGCCCACGCAAGGGTCAACCACAGCTGCACCTACCAGTTTAGCTCCCACTAACGTAGCTTCACCCGGAACAAGTGCTACTACCAGCGCGAGCTCTACTGCGGTCCCAACTGCAATCGCGCAGACCACTGTTGGTGCGTCCTCTACATCAGGAACAAATGCAGCTACTACCGTAAGGGCGTCCACAGAGGGACCTACAAATACTGGAGGGCCTACCACTGCACCAGTCAGCACATCCGCTACAACTCTCACTGGAAAACCTACCTCTCCAGGCGGTGGCTCAGCAGCTCCTTCAACCGGACCTACGAGTTCAAGCACCACCGAAAGACCTGCTCCTACTGGAGGCAGCACCGTAAACCCGACTTCTGGTGAGTCCCTTACTACAGCACCTACTACTATGGAACCTACAGGAGAAGGGACAAAGAGTCAAACATCTGCAACTAGTGCTACCCCTACAACTGCCAAACCCACCATTGTCGGAGGCAGTACAAAAAAACCCACAACTGGAGTTATCTCTACTTCATCACCGACCACGCCCGGTGGCATTACGAATAAACCTGGTACAGAAGGAGCTACAACTTCATCACCTTCCACTTCTGGAGTTAGCCCGAAGACTGTACCTACAACTGCACCCCCTGTGAGTGGAGGACCAACCACTGCCGGAAGCAAAACAGCAAAACCTACTGCTGTTGGGGCATCGAAATCTGTACCTACCACTCCCGGAGTTAGCACAACGAAGACACCAACAACTGCCCCAGCTACGACTGGAGGACTCACAACTACTGGAGGCAGTACACGAAAACCTATAGCTGGTGGGAAAACGACAAAAATGCCCTCTTCTCCGGGTGCTAGCACAACCAAATCACCAACAACTGCTCCAACTATTACTGGGGGACCCACTACTGGTGGAGGAAGTACAGGAAAACCTACAGTTGGCGGGAAAACGACGAAATTTCCCACTTCTCCGGGAGCTAGCACAACCAAATCACCAACAACTGCTCCAACTATTACTGGGGTACCCACTACTGGTGGAGGAAGTACAGGAAAACCTACAGTTGGCGGGAAAACGACGAAATTTCCCACTTCTCCGGGAGCTAGCACAACCAAATCACCAACAACTGCTCCAACTATTACTGGGGTACCCACTACTGGTGGAGGAAGTACAGGAAAACCTACAGTTGGCGGGAAAACGACGAAATTTCCCACTTCTCCGGGAGCTAGCACAACCAAATCACCAACAACTGCTCCAACTATTACTGGGGTACCCACTACTGGTGGAGGAAGTACAGGAAAACCTACAGTTGGCGGGAAAACGACGAAATTTCCCACTTCTCCGGGAGCTAGCACAACCAAATCACCAACAACTGCTCCAACTATTACTGGGGGACCCACTACTGGTGGAGGCAGTACAGGAAAACCTACAGTTGTTGGAGAAACGACAAAACCACCGACTCCTGGGATAAGCACAAAAACAGCACCAACAGCTGCACCGCCTACAGCTGGGGGACCTACTACTGCAGAACGCAGCACAAAGAAACCTACGAGTGGGGCTCAAACGACAGCAATACCAGCAACCCTCGGGGCTAGCACGAGGAAAGCGCCAACAACAGCAACACCTACCTCCAAAGGACCAACCACTGGAAGCAGTTCAAAGTCATCTGAAAGCGCCACCACTGCAACGCCTACCACTTTCAAACCGACTAGTGCAGGAAGCAGTACGAGTAGTCCTGCAGGAACTACTGTCGGCGGATCTACAGGTATCGGGGGAAGTGCTAGAAAACCGACAACAGTGTCCACTGCATCACCTACGATTACCGAAGTAACGGGAGGGAGTACCCCAGCTGGGGCCCCCACTGCTGGAGGAGGCTCAAAAAACCCGACAACTGCAGGAACGACTACTGCAGCCCCTACTGCAAGTCCTACATTGCCAGGAGGAAGTTCAAAGATCCCAACATCTGGAGGAGCCAGCATTGGGGGAACCACCACCATTTCAACTCCTGCGCCTGTCACTCAGCCAGTGACTTTGCAGATCAAGATTGAGATCAAAATATTGATCGATGACCTCATACAGGAAATAGACAATTTCCGAAGACTCCACCAAGCACCAGATGTAAAACTCTCTGTGACGCTCAGCCAGGTGGCAAACCAATGGGCGAACAAAATCGCAAATGAAGGGGTGGAGAGGATAGATCCCAACTCAAACTATGGACAACTGGTGTGTAGTCACAATGTTGGAGGCAACACCGCCAAGGCTTGTGTTGTTAAGTGGTATGGTGCTATCAGGTTCTTCGATTGGTCCAATCCCAAACTGACGAAAAACGCGTCTCCTTTTACCCAGCTGGTGTGGAAAAACAACTCCGCTATAGGGGTCGGAGTCGCGAGGGGAGGCGGTGGTATAAAAAAGCAAAACGTCGGTGGAAAAAATTTTATCGTGGTATTGTTTGAACCTGGACAAAACGATGCAGGTGACATCAAGGATAACGTACGTGCAGCAACAGGAATCTCTGAGCCGGACCCTGGGGCTGCTTGTCCCAAGGGTTATTCCAAAGTTCCTCAGGGTAGTCGATCTTGCTTCAAAGTTAATACGACTCCGCTGACTTGGGACGACTCTATTTATGGCTGCGCTCTCGATAATGGTTCGTTAGCGTCACTGCAATCAAAGGAAGAAGCCGATTTAGTTGTTAGCTTGATAAGAGCGTCCAATGAATCGGAAGCTTGGATTGGATTACATGACAGTTCCAGCGAGGGACGATATGTCTGGCTGGATGGATCTGCTATTCCTTTCTCCGAATGGCTACAGGGAGAACCTAATGGCAGGACATCAGAGAATTGCATCATACAGTCAAAGGGAACTTTTTTGTCTGGCTGGGCTGATAGGCCCTGCTCGGAAAAGAAGGCTTTTGTCTGCGAGGTGCCCGTACCAGGTTATACCAATTACAAATTGAGCTTTCTTATGACTGAGCCACAAACCCATCCCTACCAGAATTCCGCCTACAGTCAGCCTCTTTATCCTGGAAGTTATTCTATGTGTTTGCCGTACATTCAAAGTGGAAACGAACTCCTTAAGGAAACGATCATTCGTTATTTCCAAACCAAGAATATGTTTGTTCAGCCCGTAATTAACACAATTAGATGCATGAATAACGGATCATCCTTCCTTGAGGTTACTGTGAAACTAGGCCCAGGAGATGTCTCTCAGTCCATAGAATCTTTGCAAGCAAGTATCAAGGAAAACGACGGAGTTCTTGACCTCGCAAGTGGCGCTAAAGCAAAACTGGTATCTGTTGAGATTCTCAGTCCAGGTGTATCATACTGCCCAAATCATTGTACAACTACGTCGTGTCAGCCTGGATGTGATCAGTTTTGCTGCATTCAATCAGCGGCTGGGCATTATCAGCCGCAAATGCCTTATCAACCACCTCTCCAGCAGCAATATCAACAGCGATACCAACAACCCCCGTATCAACCTCAACAGCATCAATATCATCAGCCTTATCAGCCCCAGTATCAACAGCCTTATCCACAGTCAGCCAGTTACAACAACAGAGGACCTTGGCAGTGTCCCCTAGCTTGCACTCGTAGTGGCAGCCAATGCCCGGCATATTGTTCTCCGAGATGCTGCAAGAAGCGCTTGCGAATCAAAATTCACAGATTTTAA

Transcript

FUN_000883-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q98TA4	Mannose-binding protein OS=Gallus gallus OX=9031 GN=MBL PE=2 SV=2
O02659	Mannose-binding protein C OS=Bos taurus OX=9913 GN=MBL PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007647 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF00188 all species →	CAP	Cysteine-rich secretory protein family	Domain	Interproscan
PF01477 all species →	PLAT	PLAT/LH2 domain	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035940 all species →	Homologous_superfamily	CAP superfamily	Interproscan
IPR014044 all species →	Domain	CAP domain	Interproscan
IPR018378 all species →	Conserved_site	C-type lectin, conserved site	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR001024 all species →	Domain	PLAT/LH2 domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR036392 all species →	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR050801 all species →	Family	Calcium-Dependent Lectins in Immunity and Development	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22801 all species →	LITHOSTATHINE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08632	ADAMTS18; a disintegrin and metalloproteinase with thrombospondin motifs 18	EC:3.4.24.-	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.