Gene detail

Detailed information of FUN_001031-T3 in Dendrogyra cylindrus

Genomic Location: contig_1:14838625...14854822
NR annotation: XP_020627008.1, E3 SUMO-protein ligase PIAS3-like isoform X1 [Orbicella faveolata]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_001031-T3

AGAAGCAAAGCAACAAGAAAGAGCCATTTACAATATTGTACAATTCCATCGTGGATTGTCATCACCATTTCAAGAGGCGTATGTCATGTTCCATTTTACCCCGAGCCAAGTTCAACTTATAAGCACTTCAAGGGATACACGGCCAAATTATAGAAATGAATTTACAGTACAAGTGCAACTGAGattttgtttatttgaaaCAAGTTGTGAACAAGAGGACAACTTTCCGTCTTCTCTTTGTATCAAAGTCAATGGAAAAATATGCCCATTAACAGTGAACACATCACAACAGTGCAATACTAATAATGAATCAAAACGGCCTAGTAAGCCAGTGAATATAACTCCATTGTGTCGGCTCAGTCCAACTGTAGCAAATCACATTCATATTACCTGGACTCCAAAATTTGGGCAGAGGCATGTGGTAACAGCAAAACTTGTTAGAGCTGTCACATCAAGCTGTTTGATACAGAGATTGAAGGCACATGGCTACAGAAACCCTGACCATTCAAGAGCTTTGATCAAGGAAAAGTTGGCCCATGACCCAGACAGTGAAGTAGCCACCACAAGTCTACGAGTGTCGCTTCTCTGCCCACTTGGCAAGACACGGATGACCCTTCCTTGCAGggcCATCACTTGCAACCATTTACAGTGCTTTGATGCAGCCTTGTATTTGCAGATGAATGAAAGAAAAACAACATGGATTTGTCCAGTGTGTGACCAGAAGGCACCATTTGGCAAACTTGTACTGGATGGGTTGTTCAAGGAGATTTTAGAAGCATCTGCATATTGTAATGAGATTTCATTTCATGAGGATGGTTCATGGAGGCCAATAAATGATTCACAAGaaaatGAAAGCAAAAAAGCTCTCAGTGCTCTGGTAGCTGCCACAGTTTTATCAACACCAGATAGAAGTGTGACCGCAAGCAAGCCGCATCCCCAGGCTGATGCACAGGAAGTtgacaacaaaaaagaaaaagaagttcAAGTCATCGACCTCACTCTTGACAGTGATTCAGAAAGTGATgggaatgatgatgatgaagaagacGACGAGACTGAGCAGTTTAATAATGAGCGTGACTTAAACACACCAAGGCCAACTTTTGGTGTTACCAGTATTAGCAGTGTAAAGAGACCACCCAGCTTGAACAGCATGGTATTTCCTACCAATACAAGCACTTTACCTGGCTCATCAACACCCTCACTTTTGAATCCAAACTTCTTTCCTTCTCCACTCGACTTCCAATGTCAAGGACTTGACCTCGACAACATGTATTCTCTTTTCTCACCCAATGAACCATATGCTGCAATGTATCATGGGCTACTTGGCCCTCACACGTCATCAAATGTCATTCAGTTGGATTGACAGCGCCAAACTAGACGGATGTGGACAGAAAAGAGAAGCGGTCATCTTCCAGTTCCTTCAATTCGAGGAGGAAAGAgagtggaaaaaaaaacaatttattgTACATAGATAAATCTGGAATGTGCAGTGCGAACAGTAGCTAGTAGAAATACCAATCCTCCTGTCACGAGCAGTTTATTCTTCTCTTCTAACAGCAAAGTGCAAACCAATGAATTACCTCTCTTCACCCTCCCCGAGAGTTTCCTTGTGTCTCTGACGTGTAGTGTTTCGGTAAGAGTCAATATACAGGAGTCAGTCAGCCACTCACGGAATCTGGGTCAGTCAGTCATTTCCGTCGTCTTAGTTGCAGGACATTTAACAACACAGCACTGGAATAGCTGGAACGGTTGCTCTTGAGGTGGGGTGGTGTGGGGCGAGGGGCTGCCCAATGTGTACATTGTTGACGTGCTGTAACTGTTAATCGGATTTTACCAGCACATTGAAGCGAACACGTTTTCTATTACTCCACTACCATTTGTAAATGTGATTGTATATTGCAAGGAAGAAATCATTACAAAAGAAAAAGCTATTTATATTTTGTCTGACAAATTTCCGTTTTGTGCTCTTAGGGCACCGATCAAATGTTTCAAGAAATTTTACTTAAAGCACAGGATTCTACAGTTGAGGCAGTACTGCGCAAGTCTTGGGGTATTTTTTGGTCAATGCAGTTATTAAACGTGAAGCCTGTCGTCTCACTTGTGAAGTCTGTGGGAAGTGCCTTTTTTCTTAATTCTTTTCTTTGATTGATATTATCTTTAATGTAAATTCTTTATCTCGACGTAAATAAACATCAGTAATACTTGTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y6X2	E3 SUMO-protein ligase PIAS3 OS=Homo sapiens OX=9606 GN=PIAS3 PE=1 SV=2
O75928	E3 SUMO-protein ligase PIAS2 OS=Homo sapiens OX=9606 GN=PIAS2 PE=1 SV=3
O54714	E3 SUMO-protein ligase PIAS3 OS=Mus musculus OX=10090 GN=Pias3 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005261 (this species only)
Transcription factor family	zf-MIZ · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02891 all species →	zf-MIZ	MIZ/SP-RING zinc finger	Domain	Interproscan
PF14324 all species →	PINIT	PINIT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038654 all species →	Homologous_superfamily	PINIT domain superfamily	Interproscan
IPR004181 all species →	Domain	Zinc finger, MIZ-type	Interproscan
IPR023321 all species →	Domain	PINIT domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10782 all species →	ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000790 all species →	Cellular Component	chromatin	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016925 all species →	Biological Process	protein sumoylation	Interproscan
GO:0061665 all species →	Molecular Function	SUMO ligase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16064	PIAS3; E3 SUMO-protein ligase PIAS3	EC:2.3.2.-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.