Gene detail

Detailed information of FUN_001053-T1 in Acropora pulchra

Genomic Location: ntLink_6:7919928...7944111
NR annotation: XP_029193862.2, LOW QUALITY PROTEIN: staphylococcal nuclease domain-containing protein 1-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_001053-T1

ATGGCTCAATCACCTCACATGAGTCGGGGAATCGTGAAACAGGTTCTTTCAGGAGATAGTGTAGTTATACGGGGTCAACCTCGGGGAGGCCCTCCGCCGGAGAGACAGCTTTGCTTGTCTAATGTTAATGCACCAAAACTTGCGAGAAGGTCTAATCCTAACGTTGAAGGAAGCGTCGAAACGCGAGATGAGCCATTTGCTTGGGAAGCTAGGGAATTTCTTAGGAAAAAATTGATTGGCAAAGAAGTTCTTTTCACCGTGGAATACAAAGTTCCTGGAACAGGAAGGGAATATGGGTGCATCTTCTTACAGAAAGGGCAAGAACTTGAGAATATTACAGAATCTATAGTTACTGAAGGACTTGTAGAAGTCAGGCGTGGAGGCATCAAACCTTCAGATGATCAAGTAAAGTTAATTGACCTTGAAGAGTTGGCTAAGTCAGACGGCAGAGGGAAGTGGAGTGCTGATGCTTCCAATCATGTCAGAGAAATTAAATGGAGTTTAGAGACCCCAAGACACTTTCTAGATGCCAATCAAGGAAAAGAATTCAATGCTGTGATTGAGCATGTCCGTGATGGTTGCACAGTTAGAGCTTTCTTACTGCCAGACTTCTATCATGTGACAGTGATGTTTACTGGAGTCAAGTGTCCTATGATCAGACGTGAGGGAGATAAAGAAATTCCAGAACCGTTTTCTGATGAAGCAAAGTTTTTCACAGAGAGTCGCCTGTTGCAAAGAGAGGTCAAAATCATTTTGGAGGGTGTATCAAACCAGAATTACATTGGAACAATAATCCATCCAGCTGGAAATATTGCAGAGCTCCTCTTGCGAGAAGGATTTGCTCGCTGTGTAGACTGGAGCATGGCAGTACTTTCTAAAGGACACGATAAGCTGCGTGCTGCAGAAAGGTTTGCTCGTGAAAAGAGGCTAAGATTATGGAAGAATTATGTGTCAAATGCCCCATCAGTCAATGTTAAAAATAAAGAATTTACAGGAAAGGTTATGGAATGTGTCAATGCAGATGCTTTGGTTATCAAAAATCAAGATGGTGAACTAAAGAAAATTCATTTCTCCAGTTTGAGACCTCCAAGGATGGCACCCAAAGAAGATGGGACACAGGAAAAGATCTCAGACCTCAAAGATAACAAGAAGCCAAGGCCGTTGTATGATATTCCTTACATGTTGGAAGCCAGAGAATTCCTTAGGAAAAAATTAATCGGAAAGAAGGTGAATGTAAAAATTGATTACGTCAAGCCTCCAAGTGACGGATTCCCCGAGCGCACATGCGCAACAGTTACCATCGGTGGTGTCAACGTAGCTGAAGCTCTCATAAGCAAAGGTTTTGCGACCGTGCTTCGGCACAGACAAGATGACGACCAGCGATCTTCGTGTTACGATGAATTGCTTTCGGCGGAAACCCGCGCGGCAAAGAACGCTAAAGGACTACACAGCAAGAACGATAGACCGATTCACCGAGTGGCTGATCTTTCAGGGGAACCAGCGAAAGCAAAGCAGTTTTTACCATTCCTTCAAAGAGCTGGAAGATCTTTAGGAATAGTTGAATTTGTCGCCAGTGGTTCCAGACTAAGATTGTATCTACCCAAGGAGACATGTTTGGTGACTTTTCTTGTTGCAGGTATCACTTGCCCCCGTGCCGGCAGAATAGTTACTTCTCAAGGTGTTATTGCCACTCAAGGAGAACCTTTTGGTGATGAAGCCTTAGCTTTTACAAAAGACCTTTGTATGCAGAAAGAGGTTGAAGTCGAGGTGGAAGCAATAGACAAGGCTGGTAACTTCATTGGCTGGCTATTTGTGGAAAATACTAACCTCTCCGTGGCACTAGTTGAGGCTGGCCTTTCTCAAGTCCATTTTACTGCTGAGCGTTCAAATTTCTACCATCAACTTACAGTTGCGGAAGGGCAAGCAAAATCATCGAAGATTAAATTATGGGCCAATTATGAAGAACCGAAGAATATTGTTGAGATAGAGGAAACAGAAAGGAAATGCAATTTTAAAAAGGTCGTTGTTACAGAAACGCAACGCAGTCTCTCATTTTGGGCGCAGCATGTGGAATCAGGTGGCCAGCTGGAAAAACTCATGGCTGATCTGCACAATGAACTCAGCACAAACCCACCGCTACCTGGTTCCTACACAGCAAGGAAAGGCGATCTATGTGCAGCCTTATTTGTGGATAATAACTGGTACCGAGCTCGTGTAGAAAACATATCTTCAAAACAAGTTCACGTATTCTATATTGACTATGGAAATAAAGAAGTGTTACCGCAATCCAAGCTGTGCCCTCTTCCGTCATCTTTCCACAGTTTTCCACCTCAGGCACATGAATATCATCTGGCATTTATTGAACTTCCAAATGATGTGGAAGCAGAAGCTGATGCATTGGATGCTTTCAAGAATTTGGTTATTAATCGACAATTTATGCTGAATGTGGAATTTAAAGTCTCGAATCAGGTTTACGTGACTCTAGTGCAAGAGAATGGAGAAGACGTGGCCAAGACTCTTGTTTCAGATGGTCTTGTCACAGTTGAGAAAAGGAAGGAAAAGCGACTTCAGAAAGTTATGGACGAGTACAACAAAGCGCAGGATGTTGCCAGGAAGGCCAGGGTGAACCTGTGGCGTTATGGTGACTTCACTCAGGATGATGCCAAGGAGTTTGGTTTCAAAGTATAG

Transcript

FUN_001053-T1

TAAATACTATGGCTCAATCACCTCACATGAGTCGGGGAATCGTGAAACAGGTTCTTTCAGGAGATAGTGTAGTTATACGGGGTCAACCTCGGGGAGGCCCTCCGCCGGAGAGACAGCTTTGCTTGTCTAATGTTAATGCACCAAAACTTGCGAGAAGGTCTAATCCTAACGTTGAAGGAAGCGTCGAAACGCGAGATGAGCCATTTGCTTGGGAAGCTAGGGAATTTCTTAGGAAAAAATTGATTGGCAAAGAAGTTCTTTTCACCGTGGAATACAAAGTTCCTGGAACAGGAAGGGAATATGGGTGCATCTTCTTACAGAAAGGGCAAGAACTTGAGAATATTACAGAATCTATAGTTACTGAAGGACTTGTAGAAGTCAGGCGTGGAGGCATCAAACCTTCAGATGATCAAGTAAAGTTAATTGACCTTGAAGAGTTGGCTAAGTCAGACGGCAGAGGGAAGTGGAGTGCTGATGCTTCCAATCATGTCAGAGAAATTAAATGGAGTTTAGAGACCCCAAGACACTTTCTAGATGCCAATCAAGGAAAAGAATTCAATGCTGTGATTGAGCATGTCCGTGATGGTTGCACAGTTAGAGCTTTCTTACTGCCAGACTTCTATCATGTGACAGTGATGTTTACTGGAGTCAAGTGTCCTATGATCAGACGTGAGGGAGATAAAGAAATTCCAGAACCGTTTTCTGATGAAGCAAAGTTTTTCACAGAGAGTCGCCTGTTGCAAAGAGAGGTCAAAATCATTTTGGAGGGTGTATCAAACCAGAATTACATTGGAACAATAATCCATCCAGCTGGAAATATTGCAGAGCTCCTCTTGCGAGAAGGATTTGCTCGCTGTGTAGACTGGAGCATGGCAGTACTTTCTAAAGGACACGATAAGCTGCGTGCTGCAGAAAGGTTTGCTCGTGAAAAGAGGCTAAGATTATGGAAGAATTATGTGTCAAATGCCCCATCAGTCAATGTTAAAAATAAAGAATTTACAGGAAAGGTTATGGAATGTGTCAATGCAGATGCTTTGGTTATCAAAAATCAAGATGGTGAACTAAAGAAAATTCATTTCTCCAGTTTGAGACCTCCAAGGATGGCACCCAAAGAAGATGGGACACAGGAAAAGATCTCAGACCTCAAAGATAACAAGAAGCCAAGGCCGTTGTATGATATTCCTTACATGTTGGAAGCCAGAGAATTCCTTAGGAAAAAATTAATCGGAAAGAAGGTGAATGTAAAAATTGATTACGTCAAGCCTCCAAGTGACGGATTCCCCGAGCGCACATGCGCAACAGTTACCATCGGTGGTGTCAACGTAGCTGAAGCTCTCATAAGCAAAGGTTTTGCGACCGTGCTTCGGCACAGACAAGATGACGACCAGCGATCTTCGTGTTACGATGAATTGCTTTCGGCGGAAACCCGCGCGGCAAAGAACGCTAAAGGACTACACAGCAAGAACGATAGACCGATTCACCGAGTGGCTGATCTTTCAGGGGAACCAGCGAAAGCAAAGCAGTTTTTACCATTCCTTCAAAGAGCTGGAAGATCTTTAGGAATAGTTGAATTTGTCGCCAGTGGTTCCAGACTAAGATTGTATCTACCCAAGGAGACATGTTTGGTGACTTTTCTTGTTGCAGGTATCACTTGCCCCCGTGCCGGCAGAATAGTTACTTCTCAAGGTGTTATTGCCACTCAAGGAGAACCTTTTGGTGATGAAGCCTTAGCTTTTACAAAAGACCTTTGTATGCAGAAAGAGGTTGAAGTCGAGGTGGAAGCAATAGACAAGGCTGGTAACTTCATTGGCTGGCTATTTGTGGAAAATACTAACCTCTCCGTGGCACTAGTTGAGGCTGGCCTTTCTCAAGTCCATTTTACTGCTGAGCGTTCAAATTTCTACCATCAACTTACAGTTGCGGAAGGGCAAGCAAAATCATCGAAGATTAAATTATGGGCCAATTATGAAGAACCGAAGAATATTGTTGAGATAGAGGAAACAGAAAGGAAATGCAATTTTAAAAAGGTCGTTGTTACAGAAACGCAACGCAGTCTCTCATTTTGGGCGCAGCATGTGGAATCAGGTGGCCAGCTGGAAAAACTCATGGCTGATCTGCACAATGAACTCAGCACAAACCCACCGCTACCTGGTTCCTACACAGCAAGGAAAGGCGATCTATGTGCAGCCTTATTTGTGGATAATAACTGGTACCGAGCTCGTGTAGAAAACATATCTTCAAAACAAGTTCACGTATTCTATATTGACTATGGAAATAAAGAAGTGTTACCGCAATCCAAGCTGTGCCCTCTTCCGTCATCTTTCCACAGTTTTCCACCTCAGGCACATGAATATCATCTGGCATTTATTGAACTTCCAAATGATGTGGAAGCAGAAGCTGATGCATTGGATGCTTTCAAGAATTTGGTTATTAATCGACAATTTATGCTGAATGTGGAATTTAAAGTCTCGAATCAGGTTTACGTGACTCTAGTGCAAGAGAATGGAGAAGACGTGGCCAAGACTCTTGTTTCAGATGGTCTTGTCACAGTTGAGAAAAGGAAGGAAAAGCGACTTCAGAAAGTTATGGACGAGTACAACAAAGCGCAGGATGTTGCCAGGAAGGCCAGGGTGAACCTGTGGCGTTATGGTGACTTCACTCAGGATGATGCCAAGGAGTTTGGTTTCAAAGTATAGAATGAAAAAGGCGAAATGTTTACCTGCTGTCTACTAATAAATACCATAAAGTGATTTGTCTTTTCGTAGACTCCACTTTATTTTCGCGATAAAATTATGCAGATTTCTTTCAGCCATGGAAGAGGGAATTTGTGACATGTAAACTTCCCTTAAATCCAGATGTTAGTTAGAATGTCTCTGAAGAACAGAAAACGGTTTTTTTGTTTGTTTTGATTTTGTTTGTATGGTAAAAACCTAGTTAGAATTTCATTTACTTGCCACAACTTTGTGTGTTTTACTGACCGGATCCCAATTTTCTATTTTATTGACGATTAATTTCTTACCAAGCTGTTAAAAGCAGCACTGTCAAAGAATTTGTGAGCATGTCTAGAAGAAACTCGCATGAAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5REU4	Staphylococcal nuclease domain-containing protein 1 OS=Pongo abelii OX=9601 GN=SND1 PE=2 SV=1
Q863B3	Staphylococcal nuclease domain-containing protein 1 OS=Bos taurus OX=9913 GN=SND1 PE=1 SV=1
Q7KZF4	Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens OX=9606 GN=SND1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005312 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00565 all species →	SNase	Staphylococcal nuclease homologue	Domain	Interproscan
PF00567 all species →	TUDOR	Tudor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002999 all species →	Domain	Tudor domain	Interproscan
IPR047386 all species →	Domain	Tudor domain-containing protein 11, Tudor domain	Interproscan
IPR035437 all species →	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan
IPR016071 all species →	Domain	Staphylococcal nuclease (SNase-like), OB-fold	Interproscan
IPR016685 all species →	Family	RNA-induced silencing complex, nuclease component Tudor-SN	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12302 all species →	EBNA2 BINDING PROTEIN P100	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006402 all species →	Biological Process	mRNA catabolic process	Interproscan
GO:0031047 all species →	Biological Process	regulatory ncRNA-mediated gene silencing	Interproscan
GO:0031332 all species →	Cellular Component	RNAi effector complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15979	SND1; staphylococcal nuclease domain-containing protein 1	-	Viral carcinogenesis	ko05203	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.