Gene detail

Detailed information of FUN_001063-T1 in Siderastrea siderea

Genomic Location: contig_1:16601690...16617678
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_001063-T1

ACAAAGCAAAGACAGAGTGGGCTTGTAACTCGGAGTCAGTCACTATTATGCCAAGCGCTTCATCGCAATCTTCCATGCAGATCCCGGTGCAGATGGAGAACAACGACGTAACGAAAACTGTCCTGAGTCTCTTGGAAAAGAAAGTCCGTAATCTAGAAAAGCGCAAGGCTAAGCTTGATTCTTACAAGAAGCTGGTGGACGAGGGAAAATCACTGAATGACGATCAAAAGCTTGCAGTTGGTCAGTTGGCCTCAGTTGAACAGAATCTGGAATTTGCTAGGGATCTACAGAAGAATGTTGCTCAGATCTGCACTGATCATCAAAAGCTCCAGAAAAAGATTGCCAAGCGTGATCAAGCTGAGAAGGCTGCGGCCCAACATGAGAGCGATATCTCTAAAGTGTGCCAGGTCCTGGAACTGCAGTCTTTGATGGACAACTTGTCTGAAGATGTGCGGGCAGACTTTTTGAATGGTACCAATGGTGCTGTGGTTGTAACTGAGGAAAATTTTGTTCAAATTGACAAGTTTTACAAATTGATTACCCCCAATCCTGATGAAGACACACCCATAAAGGAACAGCAACTAGCAGCAAGTCAGCACATTGTGAAGTTTTTGGAGGCCAGTCCTGAAGCAGTTGTGGGAACAACTTACAAGGCACTGAACGAGTTGGTTGCATCAATAAAAAAGTGTGGTTATTTTGAGCAGTCGCAAAGtgaagaggaggaagaagaagagggggaggaagaggaggaggaagccCCTGCCGAAGGTGAAAATGACGTCCCTGAAGAACAGGAAGGATCTGGAGACGACAGTGTTCAACCAACAGATACCCAGACAGTAGAGACAACCAATGGTGGCCCAGAGCCTCATTTCAACGGTGGCAGCACAGCTGTTGTCCCAAAAGATGAAGGAAACATAGCAACACTTGCATCCAATGAACATGGCCTGAATTTTCTTAGCGAATCAGAAGTGGAATCCAAGCCCCAGACTGTAGCAGAACCACCACCACCTGTGGAAAATCAGAGTGAAGGAGCCCCCCCTGAGAGCAGTGGGTTTGGTTCCCAGGGAGCAGATGAAGGATGGGCTGAACAGGGGGGTGAAGGTACTGCTCAAGATCAAGGAGATGACATGGGTGGTTTTGACACTGTACAGCATTCTAATGGCTTCTCGCGTGGGGGACGTGGAGGTCGAGGTGGTTTCCGCAGAGGAGATGGTGGCTACAATCGCCGTGGTGGCCCACCTGGTGACAGAGGAAACAGGCGTGGTGGAAGAGGAGGGTTTGGAGGGTCACAgagaggaggaagaggaggaggattTGGACAGCAGCAGGATAATTATCAGAGGCATGGAGGTTCTTCTGGAAGAGGTGGTCGTGGAGGTCCCCCGAGGGGTGGCCGCGGTGGGCAGCGTGGGCGAGGCCCACCACAGCAGTAGCTACTTACATGTGCAACTAAATTGGAAAACTAATCTTCAGCGAGTTAGGAAGATTTTGATGGAGCTTTTGGCATAAAGTTACAAGAACTGACCTAGTTACAAGCTTATGGGCTTGTGTTGTAGGCCCTGTGCATGCGTGAAGTGTGAGACTATCAAACCTCGTGTGGTAGTTCAGCACCTTGGGCAAGATAAACGAACCAGAATTTTGCACATCAAGTCTCCTTCAAGTATACAAGACTTTCACCAGTCTATCTCCCAATGTACTATTCTGTTGAAAATGATTTACCTTCAGAAAAAATTCTCCTCAAGCATTATGGTTAGTGTTGACAGACGCCGTTTGGCTACTTTGGAGAAGATTTGATGGGGACGATGATGCAATAGTGGTGTGACACAGATGAACAACTACTTCACTTGCGCATGTTGTCAATTTATGCGCTGCTAAGGGACAAAGGCAAATGTAACTTGCCAATATTATTGCAAGAATTAATGCTGTGTGCTGGTTCTCTTCTTTGTTGTGTGAAGACTTGCATAACAGTTGCAGAGAAGACGAAAGTTGATATTTTCTATCACAAAAAAAGAACGTAATGGAATGTACTGGCCTGTCAGCATGATAGAGCAGGTTTTCAAATGACTGTTGTAAAACTATCTAGGTGAAATCCTAAATGCCATCATTCAGGTGAAAGGTTATGGAATGTTACTTCCTGTGATGCTTTTCATTACTTTGTACTTCTATAGGTGGTtcgaacttttgagtctgcggatgaatcctaaagtgtgaccattcaaatggaagctactgagcagcattTTCAAGTGGTgtagtttgtttttcattatagtAATTTTAAATAACATGAAGTTGACACTCTTTTACTTCTGGaagtcaattgaaaaccgctctattttAGCAAACTGATAAGCTGTTACATAGGTAATTTGAttccaaagttttaaaaaaaagtattgtTACACGTTGAggtttctttgtattttgtcATTAATGTGTTGTGTTCCATTGATAGCAGATGCTATGTGAAAGGAGAGATTGACTGTGGATGAAAGTATTGTAATGTACAGAATGAAATAAAGCTATTTGGTGTATTGaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18293 all species →	Caprin-1_dimer	Caprin-1 dimerization domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028816 all species →	Family	Caprin	Interproscan
IPR041637 all species →	Domain	Caprin-1 dimerization domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22922 all species →	GPI-ANCHORED PROTEIN P137	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18743	CAPRIN1, GPIAP1; caprin-1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.