Gene detail

Detailed information of FUN_001095-T2 in Dendrogyra cylindrus

Genomic Location: contig_1:15558860...15595867
NR annotation: XP_022781871.1, rho guanine nucleotide exchange factor 28-like isoform X1 [Stylophora pistillata]
Species abbreviation DCYLI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_001095-T2

ATGaactccacaaaaaccaaagaCTCGGACAAGACTTCAGAGGCATGTTGTATGGCCTTCACTCCGCAGAGCTCGCCAACCCGTGGTGGGGAGGTGATATTTATTACATACTCAGACGATTTTCCACTACCAGATAATGGAGATTTTTACATGGTATTTGAAGGAAAGAGTCAGCGTCATGTAACTTCAGCCCAGCAAATAAATGCATATACACTACGTGCTGTTGTGCCAGATCATGACCAGGCGGAGAGAGTCTCACTTACTATATACTGTGCACAAGAACACAACCTGGGATCTCTTTCGTCACACAAATTTTTGTACTTGCTTGAAACAGAACAAATCATTGCACAACTTTTGGCAGACAGTGCATCAGACAGCAAGCTTTTTGAATGCCTGGCGTCTTTGTCAGCGATATCAAATAGTGTACCCAAGGAACTTAAAGATACATTAGATTCCAGAATAACAAATGCATTTGAGTTTCTGGATTTGTCTCCTACTTGGTCATTATTTGGTGAAAATGGAACAGAGAATTATAAGAACACGAATGGTCATGAAACATtacttcacctttcggcccgaTTGGGTTTCACTCAGCTGGCAACCTACCTTCTGGATCAGCCAGGATCAATTGAGGCTCTTCATACGCAAGACAAGTTGGGAAAAGTGCCTGAGGATATTGCACGGGAGAAGGGAATGAAGCTTCTTGCAGATATGTTTTCAAGGGGCCCTGGTGATTGTGAAAAGAGAACACCAAAAGACACCACAAAACCGCAAGTGAAGAAAAGTGAATTGGGTACCACTACAATATCCAGTTACATGTCTCAGCAACAGAACTCTCTTGAAAAGGACATAGAAATGCTCCAGGATATAAACTCACTTGTTGAAGAAGAAATGAGGAAGAGAATGCCAAAGTTTCGTCATTCTTGGCCAGTCAGAAGAAAAACTAAGGATACAGCAGAAGATGCATCTAGCAGTGATGAAGAATTAAAGCAAATCAACAGAGAGCTTTCATCAAAGAAGTTTACGAGTCAGCTAAACAGCATGTCTCCTGGAAGAAACACTGGGGGTGGCAATAGACATTTGTTAGAACAAAACCTCAAGAGATTGAGAGATATCAATGAAGAAATACAAAAGCTTCGGATGGTTAATTCACAgagaggttctagagagGCTGGTAGAGGTGGAATGCAAGGAAAGCATTTACGTCGCTTGTCCTGCCCATCCTTAAGTGGCCAGGACCTTCAACAAGCCCATGTTATCGCAGGAATAAAAGCTAAAGATGACAAACCAGTCATGAATGGCACTGTAgaacaaaaagagaaaaaaccTGGCGGTCTATCAACTGATAAGTTAAGAACTCCTCAAACTAAAGAGATTATtacagaaaaaacaaaagacaTAAATCAGAGACAGGAAGATTCATCCGATACTTCAAATAATAAACTTCTTTCTGTTGACAATAAAAGTGATGTGCGACGGACACTCAGCTGGGGAAAACATGAGGAGAAGCCAGAACTGTCAAAGAGAGTAAGCTCAAGTCTTGATGATTTAACAAAGAGCATTGAAGATGAagaaaaagttgaaaataaCAAACCTCTTAGCAGGGTACAAGCTCTCAAAAACAAAAGACCTGTTTCGTTGAATCTTGACACTCCCAAAGAAGAGGGAAACAAACTTGCAGATATTTTAGATTCTATAAAGAAGGCCAGTGATGGAAAACAAAACATGGCAAAATCATCAAGCAATGCGTCAATAACATCACTGAATGATGTTGATCTAAATGTGAACCATAAAGACGGTGGACTTTTAAGTCCCAACAAGAGTAATCTTCAAACCAAGTCATATTCATACAGCTGCCTAGCTGACCTTAAACTTGGAGAAGATGGAAACCCTATTGATGATAAGAAACCTGGATCTCAATTTAGCCCTGAGGTTCAGAAAAGAAATCTATCAAAGGCAGAGACGCAGATGTCTTTGTTGGACTTCCTAAATGACGATCAAAAAAGACGTCATCTGCACTTAAATGCTAAAGCAGCAAAGAAGTGGTATTCCCTGCATGCTCTAGCTACAATAAGGGAATCCCAAGATAAAGCTCAAAACAGATTGTCGCTGGAAGAGTTTCTTGGCGAAAATGGCCCTGATATGAGTGCTGATGATTCAGAAGAAGCAGAAAAAGAGAAGCCTGAAGCTGGAAAGGGTCTCCGCCGCTTTAGCATGCTGTTTGGAAATAAGTCGTCATCCAAGCAATTAAAGCGGGAACTTCCAAAGCTTCAGAAGGGAAGTAACAGAAGTAGCTTACGAAAAGACAAGAGTTTCTCAGCGCGTAATAAGGACAGTGAAGACAACAAGAAGGAGCCGGGTGATGGTAAAGAACAAACGAAGACTGCACTTGGTCGGAGAGCTTCAGGGGTCACAGCCAAAATGTCCAAACCTGGAGAACAGGTGCCAATGCTTCCTAACCCTGGCTTGTTAACACGGTCGGGCCGAGGCGGCACTGTGAGTTCAAGAGCGAGTCTGCACGCCAAGCCAACTTCTCCTCTGCCGTTTAGAAGTAGGAGCTTCACAGTGGATGACGAgaacaaagacaaagacaagGACAAGGACAAGGATAAGGACAAGGACAAGGGAAAAGACAAACCTAGTGTTGGTGGGACACCAGAAGCGTCTGgagatgatgacgacgacgatgaagGAGAATTTGGCGATGAGtatcaaGGTGATCCTGATCTTGATATCAAAGATGAACCAGAGGCGTGGAGCGTCACAGTCGATAAGAAGATTCTAAAAAGAATGACAGCAAAGGATATCAAGAGACAAGATGTGATTCACGAATTGATTCAGACAGAAGTCCATCATGTACGGACTCTAAAAATCATGCAGAAGATATTTTACAAGGGAATGTTAGATTACTTGCCGCAGGAGACTGTGGATCAGATATTACCGAGGCTGAGTGATCTGCTTCAAATTAATGGAGACTTTTTAAACCGTCTGAAAGCAAGTGAAGGTGACGACTCTGTAGTGAACAGTGTTGGAGATATACTGGAACAGCAGTTCAGTGGAGAAAACAGTGAAAAGATGAAGAGCGCTTATGGCGAGTTTTGTAGCAATCATATGGATGGTGTTGAACTTTACAAGAAATTACACAGAACGGATAAGAAGTTTGCAGACTTTATTAAGAAATGTAATATGAACAAGTTCTGCCGACGACTGTCCATCCCAGAATGCATTACGCTTGTCACTCAGAGGCTCACCAAGTATCCAATACTCATCGAAGCTATCGTGAAAACCACAAAAGagTCCAAACCGGATTTCAACTCGCTCAAGAAGTCCATTACTCTTGTCAAGgaaatctTACAAAGCGTCGATCAGACGATAAAAGATCATGAAAAACAGAAGCAACTGCAAGACATGAAAATGAAGATGGATTTGAAAGTCACAGTGAACTACAAGAACGGAAAAGTCAAGAACATTGACTTCGCATCAAACACGAGCAAACTACTCCATGATGGTGTTCTACAGTGGAAAACAGCCAGGGGAAAACTGAGTGAGACCCGTGTGCTCATTATGGAAGACATGCTAGTTTTTCTTCAGGAAAAAGATCAGAAGTACAGCTTGCTGTCATTAGACCAGAAGGCTCCTATAGTCAGGCTCAAGAAGTTGATTGTACGAGAGGTGGCTACTGACCGGAAGGCCATCTTTCTTGTGAGCACCAGTAGTCAAGGACCTGAAATGTACGAGATAGTTTGCGAATCACCGGACGACAAAAAACGTTGGATGGAGATAATTCGTGAAGCCGTCGCCAACGCTCCTGCGGAGGAAAATCTAGATGACGGTCTCATCACCACAGCTGCAGGCGAGCGAAGGAAGATCATAATCCGTAGAGCCAATGTCCTCATTGAgcaaattcaaaacaaagagGTTGAAGACATGGACAGAGGAAAGAATTTGGCTGAAATGCAGGAACTCGTCTCCGAAATTGAAGTACTCGAAAAGGCCAAAATGGATGTCGAAAAAAGCAAGGAGCTGGCAAAGGCTAAGGAGTCCTTAGCGGCCGCTATACAGCAGGTGCAATCTACAGTGTCCAGCGAGGAGCCCTCGTCAGAAGAGGCCCATAGTGATACTCAAGGAAGCTCCTCGTCCCTGGCTGTTCCGGGGGGAGGACCCAAGAGAGCAGAGACTTTCAGCGGCTTTGATAGCAAACTCAAACCCGACAACAAAGATAACATCAACCGAGCGAGCTCCATGAGAACTGAGAGACCTGGGATGGGCTTTCCGTCAAGACAGCTCCCGGGTGCTGTCAGTCCTGTGGCTGGGGCGAGTCCAAAGATCAAACACAAGCGACGGTCCAGTGGGGGAGGGGGCTGGTCATTCCTGAGTAAAGGCACCAGTAAAGAGGACAAGGAGCAGACTGGATCAACAGGTGATTTAGCTTCAGACTCGGCATCCTCTTCGCCAACTCAAACCCCTACGCCATCACCACTGCCTGGACAAGAGGCTGAAACTGGAACGGATAGCGACGGTGCGGTCAAAAGTGCTCGGTTCAGACCAGTACGCGAACGAGGCGACATGTCACCGCCACCACAGATTAAGACTGACCATCAACATAGCAGGCTCAAGCATAACCTGCCTCTCCTGTCGTCACCGCGCACTCATCGCCAGACCCGCCTGCTTCCTAAAGACGAGGAGGACAAGGAACGAGAACAAAAAGATAAGAGTCGAGGCACACCTCAAGAAGTTATTTATTTCTGA

Transcript

FUN_001095-T2

AGAACACAGTTGGAGGCCCAAGGATTTGGGATTCCTATGTGAATTGTTTAGAAGGATCGGCTTATTTTAACTGGAAGACTGGTGACTTTTTATCCACGTGAAATCATTTTACCGTAAAACAGATAAGTCTCCACATCTTCTACATTGAAATTCTTGTGGAATGCAACGAAACAGTTTGTAAATGAGGAAATTACCGGATGGCGGCCGTACAATGAAAATGGCGGCGAGTACAGAATGAAGTACTAATGGTACTAGGCAACGATGTGTCTATCGTTGGCCGTGATTTGTCGACAAGCAGGCGTTATGTTATTTTTTGGTGTGTGCCTTTAGCTGTCCAGCGTATACCATGACTGTTACTGTTTTGAGATTTTCGAGGTTTTGCTGCTAGTGGATAGTGCCGCAAGGTTTATaaaatttcaaattcggctGGTTCAACGAGTACTTGGGTGAAGTCGTGTGTGTCATCATCGATTTAAAATGaactccacaaaaaccaaagaCTCGGACAAGACTTCAGAGGCATGTTGTATGGCCTTCACTCCGCAGAGCTCGCCAACCCGTGGTGGGGAGGTGATATTTATTACATACTCAGACGATTTTCCACTACCAGATAATGGAGATTTTTACATGGTATTTGAAGGAAAGAGTCAGCGTCATGTAACTTCAGCCCAGCAAATAAATGCATATACACTACGTGCTGTTGTGCCAGATCATGACCAGGCGGAGAGAGTCTCACTTACTATATACTGTGCACAAGAACACAACCTGGGATCTCTTTCGTCACACAAATTTTTGTACTTGCTTGAAACAGAACAAATCATTGCACAACTTTTGGCAGACAGTGCATCAGACAGCAAGCTTTTTGAATGCCTGGCGTCTTTGTCAGCGATATCAAATAGTGTACCCAAGGAACTTAAAGATACATTAGATTCCAGAATAACAAATGCATTTGAGTTTCTGGATTTGTCTCCTACTTGGTCATTATTTGGTGAAAATGGAACAGAGAATTATAAGAACACGAATGGTCATGAAACATtacttcacctttcggcccgaTTGGGTTTCACTCAGCTGGCAACCTACCTTCTGGATCAGCCAGGATCAATTGAGGCTCTTCATACGCAAGACAAGTTGGGAAAAGTGCCTGAGGATATTGCACGGGAGAAGGGAATGAAGCTTCTTGCAGATATGTTTTCAAGGGGCCCTGGTGATTGTGAAAAGAGAACACCAAAAGACACCACAAAACCGCAAGTGAAGAAAAGTGAATTGGGTACCACTACAATATCCAGTTACATGTCTCAGCAACAGAACTCTCTTGAAAAGGACATAGAAATGCTCCAGGATATAAACTCACTTGTTGAAGAAGAAATGAGGAAGAGAATGCCAAAGTTTCGTCATTCTTGGCCAGTCAGAAGAAAAACTAAGGATACAGCAGAAGATGCATCTAGCAGTGATGAAGAATTAAAGCAAATCAACAGAGAGCTTTCATCAAAGAAGTTTACGAGTCAGCTAAACAGCATGTCTCCTGGAAGAAACACTGGGGGTGGCAATAGACATTTGTTAGAACAAAACCTCAAGAGATTGAGAGATATCAATGAAGAAATACAAAAGCTTCGGATGGTTAATTCACAgagaggttctagagagGCTGGTAGAGGTGGAATGCAAGGAAAGCATTTACGTCGCTTGTCCTGCCCATCCTTAAGTGGCCAGGACCTTCAACAAGCCCATGTTATCGCAGGAATAAAAGCTAAAGATGACAAACCAGTCATGAATGGCACTGTAgaacaaaaagagaaaaaaccTGGCGGTCTATCAACTGATAAGTTAAGAACTCCTCAAACTAAAGAGATTATtacagaaaaaacaaaagacaTAAATCAGAGACAGGAAGATTCATCCGATACTTCAAATAATAAACTTCTTTCTGTTGACAATAAAAGTGATGTGCGACGGACACTCAGCTGGGGAAAACATGAGGAGAAGCCAGAACTGTCAAAGAGAGTAAGCTCAAGTCTTGATGATTTAACAAAGAGCATTGAAGATGAagaaaaagttgaaaataaCAAACCTCTTAGCAGGGTACAAGCTCTCAAAAACAAAAGACCTGTTTCGTTGAATCTTGACACTCCCAAAGAAGAGGGAAACAAACTTGCAGATATTTTAGATTCTATAAAGAAGGCCAGTGATGGAAAACAAAACATGGCAAAATCATCAAGCAATGCGTCAATAACATCACTGAATGATGTTGATCTAAATGTGAACCATAAAGACGGTGGACTTTTAAGTCCCAACAAGAGTAATCTTCAAACCAAGTCATATTCATACAGCTGCCTAGCTGACCTTAAACTTGGAGAAGATGGAAACCCTATTGATGATAAGAAACCTGGATCTCAATTTAGCCCTGAGGTTCAGAAAAGAAATCTATCAAAGGCAGAGACGCAGATGTCTTTGTTGGACTTCCTAAATGACGATCAAAAAAGACGTCATCTGCACTTAAATGCTAAAGCAGCAAAGAAGTGGTATTCCCTGCATGCTCTAGCTACAATAAGGGAATCCCAAGATAAAGCTCAAAACAGATTGTCGCTGGAAGAGTTTCTTGGCGAAAATGGCCCTGATATGAGTGCTGATGATTCAGAAGAAGCAGAAAAAGAGAAGCCTGAAGCTGGAAAGGGTCTCCGCCGCTTTAGCATGCTGTTTGGAAATAAGTCGTCATCCAAGCAATTAAAGCGGGAACTTCCAAAGCTTCAGAAGGGAAGTAACAGAAGTAGCTTACGAAAAGACAAGAGTTTCTCAGCGCGTAATAAGGACAGTGAAGACAACAAGAAGGAGCCGGGTGATGGTAAAGAACAAACGAAGACTGCACTTGGTCGGAGAGCTTCAGGGGTCACAGCCAAAATGTCCAAACCTGGAGAACAGGTGCCAATGCTTCCTAACCCTGGCTTGTTAACACGGTCGGGCCGAGGCGGCACTGTGAGTTCAAGAGCGAGTCTGCACGCCAAGCCAACTTCTCCTCTGCCGTTTAGAAGTAGGAGCTTCACAGTGGATGACGAgaacaaagacaaagacaagGACAAGGACAAGGATAAGGACAAGGACAAGGGAAAAGACAAACCTAGTGTTGGTGGGACACCAGAAGCGTCTGgagatgatgacgacgacgatgaagGAGAATTTGGCGATGAGtatcaaGGTGATCCTGATCTTGATATCAAAGATGAACCAGAGGCGTGGAGCGTCACAGTCGATAAGAAGATTCTAAAAAGAATGACAGCAAAGGATATCAAGAGACAAGATGTGATTCACGAATTGATTCAGACAGAAGTCCATCATGTACGGACTCTAAAAATCATGCAGAAGATATTTTACAAGGGAATGTTAGATTACTTGCCGCAGGAGACTGTGGATCAGATATTACCGAGGCTGAGTGATCTGCTTCAAATTAATGGAGACTTTTTAAACCGTCTGAAAGCAAGTGAAGGTGACGACTCTGTAGTGAACAGTGTTGGAGATATACTGGAACAGCAGTTCAGTGGAGAAAACAGTGAAAAGATGAAGAGCGCTTATGGCGAGTTTTGTAGCAATCATATGGATGGTGTTGAACTTTACAAGAAATTACACAGAACGGATAAGAAGTTTGCAGACTTTATTAAGAAATGTAATATGAACAAGTTCTGCCGACGACTGTCCATCCCAGAATGCATTACGCTTGTCACTCAGAGGCTCACCAAGTATCCAATACTCATCGAAGCTATCGTGAAAACCACAAAAGagTCCAAACCGGATTTCAACTCGCTCAAGAAGTCCATTACTCTTGTCAAGgaaatctTACAAAGCGTCGATCAGACGATAAAAGATCATGAAAAACAGAAGCAACTGCAAGACATGAAAATGAAGATGGATTTGAAAGTCACAGTGAACTACAAGAACGGAAAAGTCAAGAACATTGACTTCGCATCAAACACGAGCAAACTACTCCATGATGGTGTTCTACAGTGGAAAACAGCCAGGGGAAAACTGAGTGAGACCCGTGTGCTCATTATGGAAGACATGCTAGTTTTTCTTCAGGAAAAAGATCAGAAGTACAGCTTGCTGTCATTAGACCAGAAGGCTCCTATAGTCAGGCTCAAGAAGTTGATTGTACGAGAGGTGGCTACTGACCGGAAGGCCATCTTTCTTGTGAGCACCAGTAGTCAAGGACCTGAAATGTACGAGATAGTTTGCGAATCACCGGACGACAAAAAACGTTGGATGGAGATAATTCGTGAAGCCGTCGCCAACGCTCCTGCGGAGGAAAATCTAGATGACGGTCTCATCACCACAGCTGCAGGCGAGCGAAGGAAGATCATAATCCGTAGAGCCAATGTCCTCATTGAgcaaattcaaaacaaagagGTTGAAGACATGGACAGAGGAAAGAATTTGGCTGAAATGCAGGAACTCGTCTCCGAAATTGAAGTACTCGAAAAGGCCAAAATGGATGTCGAAAAAAGCAAGGAGCTGGCAAAGGCTAAGGAGTCCTTAGCGGCCGCTATACAGCAGGTGCAATCTACAGTGTCCAGCGAGGAGCCCTCGTCAGAAGAGGCCCATAGTGATACTCAAGGAAGCTCCTCGTCCCTGGCTGTTCCGGGGGGAGGACCCAAGAGAGCAGAGACTTTCAGCGGCTTTGATAGCAAACTCAAACCCGACAACAAAGATAACATCAACCGAGCGAGCTCCATGAGAACTGAGAGACCTGGGATGGGCTTTCCGTCAAGACAGCTCCCGGGTGCTGTCAGTCCTGTGGCTGGGGCGAGTCCAAAGATCAAACACAAGCGACGGTCCAGTGGGGGAGGGGGCTGGTCATTCCTGAGTAAAGGCACCAGTAAAGAGGACAAGGAGCAGACTGGATCAACAGGTGATTTAGCTTCAGACTCGGCATCCTCTTCGCCAACTCAAACCCCTACGCCATCACCACTGCCTGGACAAGAGGCTGAAACTGGAACGGATAGCGACGGTGCGGTCAAAAGTGCTCGGTTCAGACCAGTACGCGAACGAGGCGACATGTCACCGCCACCACAGATTAAGACTGACCATCAACATAGCAGGCTCAAGCATAACCTGCCTCTCCTGTCGTCACCGCGCACTCATCGCCAGACCCGCCTGCTTCCTAAAGACGAGGAGGACAAGGAACGAGAACAAAAAGATAAGAGTCGAGGCACACCTCAAGAAGTTATTTATTTCTGATAGGCGAGGCGAGaTATGGCTTTGACCAAGACGTGTTTTCCCCGTTTTGAAGATATAAACATAAACAAACCTAGAAAAATGTAAATAGAAGCGTGCGATCGGAGGCAAAATAATGCACTTTATGAAATTCGTTTGTATAGTGACTTGGGTAACAAGACAATTACGACAACGTAGAAGATCATTTTAATACAACAACAGCGACAGTTTGACGTCAATGGCTGATTTCCCGTTACTCGCGCTATAGAGCAGTCGTAGAACTCCATAGGGAAACGTGTTGAATTTAACAGTAGATAGTGTGCAAAGATATTAACGAAATAGCCGATCATCTTTTTCATGCTCTTTTCAAATCTTTGTAGATTTCGTTTACTTTCCCAACGCGTGAAAGAGTGAATAAATCATATTTTTGTACAATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P97433	Rho guanine nucleotide exchange factor 28 OS=Mus musculus OX=10090 GN=Arhgef28 PE=1 SV=2
Q6ZSZ5	Rho guanine nucleotide exchange factor 18 OS=Homo sapiens OX=9606 GN=ARHGEF18 PE=1 SV=4
P0C6P5	Rho guanine nucleotide exchange factor 28 OS=Rattus norvegicus OX=10116 GN=Arhgef28 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001928 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF17838 all species →	PH_16	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR051632 all species →	Family	Rho guanine nucleotide exchange factor	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR041020 all species →	Domain	ARHGEF1-like, PH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13944 all species →	AGAP007712-PA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0035023 all species →	Biological Process	regulation of Rho protein signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16529	ARHGEF13; A-kinase anchor protein 13	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.