Detailed information of FUN_001212-T1 in Siderastrea siderea

Genomic Location: contig_1:18970240...19006584
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002101 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05033
all species →
Pre-SETPre-SET motifFamilyInterproscan
PF18359
all species →
Tudor_5Histone methyltransferase Tudor domain 1DomainInterproscan
PF00856
all species →
SETSET domainFamilyInterproscan
PF18358
all species →
Tudor_4Histone methyltransferase Tudor domainDomainInterproscan
PF01429
all species →
MBDMethyl-CpG binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007728
all species →
DomainPre-SET domainInterproscan
IPR046341
all species →
Homologous_superfamilySET domain superfamilyInterproscan
IPR016177
all species →
Homologous_superfamilyDNA-binding domain superfamilyInterproscan
IPR041291
all species →
DomainHistone methyltransferase, Tudor domain 1Interproscan
IPR002999
all species →
DomainTudor domainInterproscan
IPR001739
all species →
DomainMethyl-CpG DNA bindingInterproscan
IPR051516
all species →
FamilyHistone-lysine N-methyltransferase SETDBInterproscan
IPR001214
all species →
DomainSET domainInterproscan
IPR041292
all species →
DomainHistone methyltransferase, Tudor domain 2Interproscan
IPR003616
all species →
DomainPost-SET domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46024
all species →
HISTONE-LYSINE N-METHYLTRANSFERASE EGGLESSInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0008270
all species →
Molecular Functionzinc ion bindingInterproscan
GO:0042054
all species →
Molecular Functionhistone methyltransferase activityInterproscan
GO:0003677
all species →
Molecular FunctionDNA bindingInterproscan
GO:0010629
all species →
Biological Processnegative regulation of gene expressionInterproscan
GO:0046974
all species →
Molecular Functionhistone H3K9 methyltransferase activityInterproscan
GO:0051567
all species →
Biological Processobsolete histone H3-K9 methylationInterproscan
GO:0070828
all species →
Biological Processheterochromatin organizationInterproscan
GO:0090309
all species →
Biological Processobsolete positive regulation of DNA methylation-dependent heterochromatin formationInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11421SETDB1; [histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferaseEC:2.1.1.366
Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_001212-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
12TPM > 0
7Conditions
101.5Max TPM
4.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 2 6.90 101.54
holobiont · low.pH Control.temp 20 1 1.56 31.24
holobiont · control.pH_high.temp 20 1 1.71 34.18
holobiont · control.pH Control.temp 19 2 5.19 90.18
Whole organism 4 4 20.51 22.30
unannotated 1 1 11.41 11.41
live coral tissue/skeleton 1 1 15.71 15.71

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP