Gene detail

Detailed information of FUN_001241-T1 in Acropora pulchra

Genomic Location: ntLink_6:10212726...10224991
NR annotation: XP_029197880.2, LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 6-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_001241-T1

CGAGGATCTAATTTGGTGGCCATGTTGTACGCCATATTTGTGGAATATTATTTCAGGAAAAGAGTGTCATGACTCGTCCAAGATGCCGAAAGAAAAACTTGAAAATAACGAAATTCGAAGAACCTATACGCTTATGAGTGCGGAAGATGCAGCAAATGGCAAAAAGTCTCATTGGACTGAACTGGAAATTACGGCCCCTATCCGAAATTTGAGTCCGACATTGTGGCAGCTGGACTTTTTGACTGCGTTGTTTTTGAACGACAATAATCTTACTAAAATTCCCCCAGAAATATCAAGACTAGCTCAACTCAAGCACTTGGATCTATCGTCTAATAAACTCCGGAGTTTGCCGAGTGAACTTGGAGATCTGGTCACATTACGTGAGCTTCTCCTGTGCAATAATAGCCTCCGAGCTTTACCAAACGAACTGGGAAAACTTTTCCAGTTACAAACTCTTGGATTACAAGGAAACCCGTTGCCGTCGGATATTTTGAGTGTAAATGCGGAGCAAAATGGTACAGCTAAACTTCTCAGCTTCATGTTGGACCATTTAACTGTTTGCCCACGACCACCTGAGAGACAGTGGATTTCACTACATCCAGAGAAAACAAGGAATTCTGCCTTGACATTTAGTGTCATGTGTTATAATGTGCTCTGCGACAAGTATTGCACACGGCAGATTTATGGATATTGCCCATCGTGGGCCTTGAACTGGGAGTACAGGAAATCAGCAATACTTAAGGAGATCCTGCATTATGGTGCTGACATTCTCAGCTTGCAGGAAATTGAAACAGAGCAGTTCTGCAATTTCTTTCTTCCTGAACTGCAACAACATGGCTATGACGGAATCTTTAGTCCAAAGTCAAGAGCAAGAACAATGACGGAAGAAGACCGCAAATATGTTGATGGATGTGCAATATTCTATCGGACATCAAAATTCACCTTTGTTAAAGAGTACCTGATTGAGTTCAACCAGCTGGCCATGGCCAATGCCTCAGGTGCCGATGACATGCTCAATAGAGTAATGACTAAAGACAATATTGGAATTGCGGCATTGCTAGAACTCAAAGAAGGCTACGTTAGCTATAACAACGATGTGAACATGCCGAGACAGCAAGTACTTGTTTCCAATGTCCACATCCATTGGGATCCTGAATTTAAAGATGTCAAGTTAATTCAAACTGTTATGCTAATGCATGAACTGATGAACATCATGCAGGAAATCAATCCGGGGTTTATGGTCCAAGGAGGTAAAAATGGCACACCACCAAGCAAATCTATTCCATTGGTGTGCTGTGGGGATCTGAACTCCTTACCAAACTCAGGAGTAGTGGAATTCTTGGAGAAGGGAAGGGTGCGAAGTGACCATGGAGATTTCCTAGACATGAAGTATGAAGGGTTCTTGTCACGCCTCAGCAATGGGAAGAATGGTGAAAAATCTGGAGACCTGACCCATTGCTTTAAGCTGGAACGCGCCTACTCTGAGGAACAGATGACCTACAGCAACCTCACATATTCATTCACTGGAGTGATTGATTACATCTATTTCACTTCCGACCTGCTGGTTCCCGTTGGGGTCCTTGGGTCAGTCAGTCAACAATACATCAAGGAAAACAAGATCATTGGATGGCCTCACCCTCACTTTCCATCAGATCACCAGTCTTTGCTTGTAGAATTTGAAGCACTCAGTTTCAGCAATGGGGTGCCTTTCTATGGGTACATGCCTGGCTCCCATCACTCAAGGTAGTGTGTTCCATGCAATAATAATAGTAATAATAATAATAATTATTGTAATCATGCCATTCCAGTTAAATATTGTAAATTTGTAACAAAGGTGTAAAAAGGCTGACCAACTGTGAGCCATTTTTAAAGGTCAAGTCACTCGGAGACTTGTTTTGTAAACAACCTGCCAACCTCATTGAAGATCTTTTTCTCTCATTCATTTTTATAGTCAGCCATTGTAGATTAGCCCAAGTCATTTTTATCTTATCTCTCTGTCATTGTGTTTGTTTGAGTTTATAATTACTATTTTGAATAGATTGGCTTTTTATTTATTGTCTGTAGTTCAAACCCCCTGTTAAACTCTCGAAATTCCCTTTGTGCAACATCTGATTATCACTTAAGATATGACTCTGACTTCCTTTTTGTGACGAGAAATTATTATGTGAATTTTTTTAAATCTCTATTTGCTAGACCAGACAACACTTCTCAACAAGAAGTGCATGCATGCCGCAGGTCTACTCTTTGGAATTAAACAGACCTTGAAATATTTAGAGATTTTCATAATACACCCCTGTAGAATGTTCAGATATTCCTTGAACCCTTCTAGACAAGCATACCATTCATTGACGTGCAACAAAAATATTTGAGAAATAGAAAACATTTTCCGTGTTTGTATCGAGTTATAGAAACACGAGTGGAAGTTTGGGAGAACGAGAAATGCTGTGAGAACACGAGCCGCAGGCGAGGGTTTCCTCAGCTTTTTGGAGTTCTCCCAAACTTTCACGAGTGTTTCTATAACTCGATAGAAACACGAAGGAAATGTTTTATCATTTCTTTTAGAAAGTAGCCCTCGGAAAATAACGTAAAACGAAGAACACGTGATAGCGTTATTTATCATCAAAATGTACATTCTCAATTTACACGTCATAAGCTACGACATCATCTTTTGTTTCTATCGAGTCATAGAAACACGATTATTAACCAATCAGCGCGCGTATTTTCCTTGAGCTATTTTCTTAGTACAACTTAATCTCCTCAGTTTGTTATTGTAGGCAGTAGAAGTTATAGTAGCCACACAAATCCTGGTTCACACAAGCAGATTTAGTTGGCATTTGTTTAAGATAAATTTTCTTGCCATTGGGTTGGGAAAAAGGAAGAAAACGTGGAAACCAGTCTTGATGCTGCTCTACCCAAGGAACGAGAAAATTGATTTCCTCTTGTGGTTTGTTTTCACCTCTTACAATCTTGCAGTAGTTTTTTAGTTTCTACACTTGCTTTTCAGCAATTTGTTTTTCTATGCACACTTAAAACTTAAAATTGCCCAATAATATTTGCTTGTGTGGATGAGGCTCAAGAGCAACTGTAAAGGCTTATGTGTTTAACTTCGGCAGCCAGCAACTGTTTCCATGCGATGAGTTTGCTTGGATCTTTAAGGAGAATCCCTCCGCTATTGATTCTTCTTGCAATTTTGTGTTAATGTACAAATATCTTTGTTTAAAAACGTGCGCATCTACATAGCTATGTTGAGCCGAGCGAGGAGCACGATTTTAATGACTATCAAAATTCATTGGTAAGTGAGGATTTTAATGAGATATTGTGCGAATTTTACGTTTGTTGTCAAAGAATGGAACGCGAGTGGTTTGTTTTGCAGAAATTCATTTGTTATTTAGGTGTTAGTTATTTAAGCTGGGTACCTACGGACAATAATTGTAGGAGAAATTTCGTCTCATACGAAATCTCGTTTTCCATAGGAAAGAATTAAGATTGCAATTAGAATGATAAGTGATTAATGCAATAAAAACTAGTCAACTTGTAGCCGTACCCACCCCTTTCATCTTTTGGCTTTGTTGGGGGTGGGGTAGGGTGAGATGTGTAGGCCGAAAGAAAGTCAGTTTGGTAACTTTGACGCGTTTGCCATTGATCCCCTGCTTGCGTCTGTTGAAAACTTGTAATGTTTTGGCACATTGCAATTGCCATTCTCTTCTTTGGGTCTTGAAATGACAAACGGAAAAGCCTTCCCCAACGAGAGGGTGTTGGGGTCATGGTTGTCCTCCTCTTTGTTATGTAAATTACTTACCCTCTGAAATTTCCTGGGTTTAGAATATGTTGGGGTATTCAATTTAATTACTCAAAGGAGGTCGCTACGTCGTTTCCGCGTTGCTAAGTTAAACTAGTTCCTGCGATTATGTGAAACTTAGTTTTTGTGCGTTTACAGACGTCATGTAAGGAAGTGTTAATAGTGGCCAATCATCTCCGAAGCGACAAAGTGAACCAATCAGAACACGCGGGAAAGTGTGTTAAAACGTGTGTTACCAAATAAGACTTCTAATTGGTCGATAAGGTCGCTTACTATATTCTCACAAATCATTGGACAAAAGTACTTTTATAATGAAGCTGATGATTCGATGGGGATTCTCTCGAAGAAGGTTAACGCCAAGTTTTTTGTGGTGTGGGTTTAAGTTAGTTCTGAGCATCACACCTTGGGCTCGTCTGTAATTGTGTGGCCTTTCTGTTCCTGTTTGAAACCTTCGCGATGTATTTTTAGGAATATTTGTAATTTGAGACTATTAGGAAGTGTGAATTTCAGTCATTCCCGGTTCTGAAGGTGTCACATTTGGTAAATTTAACACTTATTTCCAATTTAAGCTGCTCATGTCGTGAAAATTGCAAATTTTTAATATTATCTTCATTTATTACTTTAATATGCTGCAATTAATGATGTGCAATCTTGCAGTAAATTACAAATGTTATCAATACAGTTAATCACACTGTAGCTGTTGACCAGGCAAGGATTTATCTAAATCAGGTCTTTCTATCCCTTGAAATTATATGAACTGTGGTTGGAATAGTTGTTGCAGCCTCTAGCACGGATTAGAAGCAGGGGTGCCGGTCTGTGACTAAATTCGCTTGTTGGTTTGGCGAAATTGGCTGTTTTGGCCAGCGACTTGCTCTATAGTGTCACCAGGGCTCAGTTGTTCAAACCCAGACTGAACTCATGCAGGAGTAGCGGAAACTTTAAAAACCATCTACATACAAACCCAAGAATTGTTTCATAAGATTTTGGTCCTAGGTTTTTCAACCAGATCTTTCACTTTCTGTCAAGTTTAAATCGTAAGGTTAGGGCATTTTAGACCGGAAAAATTCAAATCGTGGGTTAATGTTGACCATTTTTTTTGTGAACAGCTGGACCCTGAACTGTTGAAAAACATGGACGTTGCACAGGAAAACGTTCTAGCACTAAATTTAGGACACACGAGTGCTTGGCCTCGAACCAATCAGAGTATTGTTCCTTTTCAAGCTGTACTGGTATTTGTTTTATTTACCTTACGCAAGTCTCGAATTTGATTTTAGTGGGTCCTGTCTGGTCACAGTCAGTAAAGTGATAAGCCTTTTGCGCATGTGTAGTGTGTGCAGGTACACAGTCTCTCAGCCTGAAATGCAGGCGTATTTTAACGAAAGGGATTTTAGTTTTTTTTTCCCATCCCCGTCATCGCTTTTGCTTGAAGAGGACCGACGGCCAAGGTAGTGTTAGTGCACAATCTCACGCTGTTAGAGCTCAAATTTGTTCCCAGTGGAAGATTACACCCAATCAGATAAATAGCTATGGAATGGTTTGCTTGGTTCTTGTACAATTTAAAAACTCGATGCAGTGTTATCTCAGTTGTGGGGCATGATTCAGTTATGGCTGACCAACGAACCAGTATTATTCGTTTTTTTTTTAAGTACGTGAAATAGATCGTTTGCACGTGACGTCTTAGTAGCCATATTAGTGGACCTTAGCGAAGAATTGTTGGCTATCTTGAAGTATCCCTTGGGGACTGGCCATGAGTTCAGTTTTCATGCAGATATTTCCTTTTGTTTCGTCAAAACATTGACAACTTGTCACGTGAGTGCAAACCATCTGTAATCTTTGTTTTGTTTGTTTGCTATTGTTTTTTTTTTCCGACAATTTCATCGTTTTAAGGAAAAAAAGAAGGAAAGCCTTTACTGGCATGTTTTTTTTTTTAGTTTTTTTTAAGCGCCTATCCTCGCCCTTCACTGGTTGTTGTGTATGTAACCAAGCACGGTTTAAGGACTGGCGGTTAGTTTCCTTTGCGCACAACTTGGCACCCCCGGATATTTGTAAATATTTGTCTGCCTTTTTTGTGCAGTTTTTGTTTTCTTAAGAAAGCTGTCTGTTTAATTTTGTAATGGCTTATTTTATTTTCGTTTCCAAGGAAATATACAGTCGACTTTGACTAGAAATTTGATCAGTTGGAACTTGTAGAGGCAAATCATACATAACAAAGATTGAACCCGCAACCTGATTTACTTTTATGAAAAGTTTGACACTGGGATCGCTTCTAGCCTCCTACGCTGACGGTTTTTTTTTGGGGGGGGGGGTGGGGGGGCTCGAGTTTCACCTCCTGCCCGCAATTCCACCAGTCCACTGATACGTCTCCGTGGGAGGGTAGAATCTTTCCCAGCCATTTTTTTTTTAATTATTGATCTAGACATAGCAACGTCCTCCTGTAAATTGTTTTAAAGGAGGATGGCATGATCAGTTTTTTTTCCTGTTGGGTGACTGGCTATTAATCCTGCATTAGCTTTATTTGTCTACTTCGATTCTATGACACTGTAATTTTCCCCTTAACGTCCTCATTTGGATTCAGTGTGAGTTGCATGGTATATTTTGTAGATTCAATGCGTATAGATAGTTTGTTAAAACCTTTTTAATCGAAACTGCTATTTCTGATAAAAATGCAGAACAACTGGAATAAACATATTGAACGGTAAAAAAGTCAATTTGTGATTCTTGGGGATTCTGCTGTTGTTGTGGGTTACACATACATACACACGGTAGAATCTGGAAACTTAGCGATATCCCTCCCCACGACACATTTGTACTTCCTTTCCATAAGGAACCTTTTACGACGACAAAATTTTTAAAGTTTTCTCGTAGTTGATAGTAACTATGGTAACATTTTGCGTTCACGTCGCGCTGAGCTAGAGTTATCACAAGACGTTCAAGGGCTGCGGCTGTCTTTGTCGCTAAAGGTTTCGCTGTCTCGTTGTGTCTGGATGTTCCCTTGAGCATACTTTGGGTGAAGTTCTCTAGCTGGCAAGGAGAATTGAGGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VEG6	CCR4-NOT transcription complex subunit 6-like OS=Mus musculus OX=10090 GN=Cnot6l PE=1 SV=2
A2BHJ4	CCR4-NOT transcription complex subunit 6-like OS=Danio rerio OX=7955 GN=cnot6l PE=2 SV=1
Q5BJ41	CCR4-NOT transcription complex subunit 6 OS=Xenopus laevis OX=8355 GN=cnot6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007933 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR050410 all species →	Family	CCR4/nocturin mRNA turnover and transcription	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12121 all species →	CARBON CATABOLITE REPRESSOR PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0000289 all species →	Biological Process	nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0004535 all species →	Molecular Function	poly(A)-specific ribonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030014 all species →	Cellular Component	CCR4-NOT complex	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12603	CNOT6, CCR4; CCR4-NOT transcription complex subunit 6	EC:3.1.13.4	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.