Detailed information of FUN_001302-T1 in Siderastrea siderea

Genomic Location: contig_1:20236554...20278806
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21041
all species →
XMAP215_CLASP_TOGXMAP215/Dis1/CLASP, TOG domainRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR016024
all species →
Homologous_superfamilyArmadillo-type foldInterproscan
IPR011989
all species →
Homologous_superfamilyArmadillo-like helicalInterproscan
IPR048491
all species →
DomainXMAP215/Dis1/CLASP, TOG domainInterproscan
IPR034085
all species →
DomainTOG domainInterproscan
IPR045110
all species →
FamilyXMAP215Interproscan
IPR021133
all species →
RepeatHEAT, type 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12609
all species →
MICROTUBULE ASSOCIATED PROTEIN XMAP215Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0015631
all species →
Molecular Functiontubulin bindingInterproscan
GO:0000776
all species →
Cellular ComponentkinetochoreInterproscan
GO:0000922
all species →
Cellular Componentspindle poleInterproscan
GO:0005813
all species →
Cellular ComponentcentrosomeInterproscan
GO:0007051
all species →
Biological Processspindle organizationInterproscan
GO:0007052
all species →
Biological Processmitotic spindle organizationInterproscan
GO:0008017
all species →
Molecular Functionmicrotubule bindingInterproscan
GO:0030951
all species →
Biological Processestablishment or maintenance of microtubule cytoskeleton polarityInterproscan
GO:0035371
all species →
Cellular Componentmicrotubule plus-endInterproscan
GO:0046785
all species →
Biological Processmicrotubule polymerizationInterproscan
GO:0051010
all species →
Molecular Functionmicrotubule plus-end bindingInterproscan
GO:0051298
all species →
Biological Processcentrosome duplicationInterproscan
GO:0061863
all species →
Molecular Functionmicrotubule plus end polymeraseInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K16803CKAP5; cytoskeleton-associated protein 5-Cytoskeleton proteinsko04812deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_001302-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
21TPM > 0
7Conditions
45.6Max TPM
5.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 4 5.29 45.64
holobiont · low.pH Control.temp 20 1 0.76 15.21
holobiont · control.pH_high.temp 20 4 2.70 20.20
holobiont · control.pH Control.temp 19 6 4.84 25.82
Whole organism 4 4 31.29 38.41
unannotated 1 1 14.06 14.06
live coral tissue/skeleton 1 1 18.97 18.97

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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