Gene detail

Detailed information of FUN_001317-T1 in Acropora pulchra

Genomic Location: ntLink_6:11062492...11077368
NR annotation: XP_029212850.2, sec1 family domain-containing protein 2-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_001317-T1

ATGGCGGCTAAAAGTGCATTAGAACGTGGAATATCATCGATCTGGCAAAAACTCTTGACTGTGGTTAACAATGCTGTGGTTTATCTTGATTCTCGTACGGCTGAATGGGTACACTGGTGTGGAAATCTCGAGCAATTATTTGAAGCAGGGGCACTAAATGTATACGACATCTCTTCGAGTAGAGGAGGAAATGAATCAGAGACAAAGGCTGTCTTTATTGTTGGCACTCTGCTGCAAAGTGAAACTCTGGGATTGATCCAGTCACTTGTACAAGCCAGTGATTTTCAACACTGTACAGTTCTCTGCACAGTTCCAGAAAGTGTTCACAGCTTTGCTAAACGTACAGAGGTTTCAGATGCATCACCATTTGGAGAGCTGTCTCAGAAACTTAGGGAATGGATGGGAAATATGTATGCTACTGTGGATGTTCACTACCTGCCATTATTCCCTGCTGTGGTGTGTCCTGGCCTCTTCATTGCTCCTGTATTCTCAACATTCTTTCCGTTACTGCCTTCAGATGTTCCGAGACTGCAAAAGTTTCTTCGAGGCATTGGTGACAAGAGAGTGTTTGATAACCTCAATGATTTTGATATGCCTTCACTACCTCATAATTTGCAACTGAAAATTAAAATGTTTGCATTTGGTCTGAACAATTTGTTTGAGCTGTTAGAGGTGAATGAAGATTGTTATGGTGTTGGCTATCTCAGCAAGGTTATCGCCACAGAACTAGCAAACCTACCAGCAGCAAGAATGAGGAGAAAGAGTGCAAAGAGCCGTGGATCTCTGATTCTGATTGACAGGACGCTAGATCTAGTGGGTCCATCTGGGCACTCTTGTGACACTCTTGCGGACAGAATCATTCAGCTGTTGCCCCGGTTAACTCAACACAATAGTGATGTAGCCGTGGACATGTCTCCTCTCTGTTCCCATGGCAGTACTACTCCCCAGACTGTAGCACCTGGCTGCTTGGCTCATACTAGAGATCCCTCTACCCAGGCTCTTCTCTGTTCTATGATAACCAAGAGACAAAAGGAAACTATGGTGGATCTTTCAAGGCAACTTAAGGAAGCTTTGAACAAAGAATCATTGTTACAAACTAGCAAAGATGTGCAAAGCAAAGTCACAGTTGAACAGCTTAAAATGATGACAGAACATTTCAGAGGCCAGCCAAAATGTATGAAAAAACACAGTGCTCTTTTGCAGCTTGTGAGAGCTGCCATAATGGCATTAACCAGTGAAAATATCTCACATATGGATGAACTACAAGCACTAGAAAAAGGTTTAATTCTTCATGTTTCAGAACACGGCCCACAAAGTTCTTTATCCCAGGTGATGAAGACATTCCAAGCTGACAAACAACAAAAGTTTGTCAACATTGAAGACATTCTTCTGATCTTGATTTACCTGTATTCATTGACTGGACAGGAATGCTATAATTCTCCCATTGAAGAGGAGCAAATGATAAGCATGGTGATTAACAGTATACTTAGCGGGGAACTCAAATGCAGCAGTGAGTCATTTCTAGGATCTGATATTTTAGAGAAGACGGTCAGAAGCAGGATATCTGATGCGTTTGAGAAAGTACGTGGTGTTAACTTAGCGAGGGCAGAACTTCAAATGTTCAGAGATGTATTTCAGCATGGAACTGCACTAAAGCAAGCGCAGTATCGACCACTCGTCAAACAGATTGTAGATGGCATATTCAACCCAGAGTCACCTGAGCTGCCAGACGTCGAGTTCAAATCACATGGATTAAAGGATTTCATCAAAACCGGATTTAGTTTATTCATGAACGTGAGTAAACCTCGACCTAATAACCATCCATTGTTGGTGTTGTTTGTTGTCGGAGGAATCACGTGTTCGGAAGTTTACCAAATAAGAGAAGCGCTCGCAGCTTATCATCCTAATACACAGCTTTTGATCGGCAGTACCAGACTCCTGAAAGCAAATGACTTGTTCAACCAAATTTTTCTTCAAGACAATCTCTTCCCTGCCCTGCACTAG

Transcript

FUN_001317-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8WU76	Sec1 family domain-containing protein 2 OS=Homo sapiens OX=9606 GN=SCFD2 PE=1 SV=2
Q8BTY8	Sec1 family domain-containing protein 2 OS=Mus musculus OX=10090 GN=Scfd2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005151 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00995 all species →	Sec1	Sec1 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001619 all species →	Family	Sec1-like protein	Interproscan
IPR027482 all species →	Homologous_superfamily	Sec1-like, domain 2	Interproscan
IPR036045 all species →	Homologous_superfamily	Sec1-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11679 all species →	VESICLE PROTEIN SORTING-ASSOCIATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_001317-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.