Detailed information of FUN_001425-T2 in Acropora pulchra

Genomic Location: ntLink_6:12316564...12344155
NR annotation: XP_029199401.2, probable JmjC domain-containing histone demethylation protein 2C isoform X1 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9Y4C1Lysine-specific demethylase 3A OS=Homo sapiens OX=9606 GN=KDM3A PE=1 SV=4
Q63679Lysine-specific demethylase 3A OS=Rattus norvegicus OX=10116 GN=Kdm3a PE=2 SV=1
Q6ZPY7Lysine-specific demethylase 3B OS=Mus musculus OX=10090 GN=Kdm3b PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004025 (this species only)

 Pfam domain
No Pfam domain signature was detected for FUN_001425-T2. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR045109
all species →		FamilyHistone demethylase JHDM2-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12549
all species →		JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000118
all species →		Cellular Componenthistone deacetylase complexInterproscan
GO:0000785
all species →		Cellular ComponentchromatinInterproscan
GO:0003712
all species →		Molecular Functiontranscription coregulator activityInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0031490
all species →		Molecular Functionchromatin DNA bindingInterproscan
GO:0032454
all species →		Molecular Functionhistone H3K9 demethylase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_001425-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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