Gene detail

Detailed information of FUN_001452-T2 in Siderastrea siderea

Genomic Location: contig_1:21869140...21880282
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_001452-T2

tccaagatggcggaccgGGAGTCAGTTCTTCTGGAAGTGATCAACACAAAGCATAAAAAGAATGCTGGAAGTTTGCGACTCCTTTCAAACAACTTGATTTGGATTCCTCATGGTTCAGATAATCCTAAGTTGTCGTGTGCATACTCTGAAATCAAAGTTCAGCGGATAAGTCCTGAAGGAAGTTCCAAAGTACAGATTCAGCTTGTACTTCACGATGGAAACTCGTTCACTTTCCAGTTCACTAGCGAACCACAGGCAAATGCTAAGAAAGAAAGAGATGAAGCAAAGGATCTCCTGGCACAACTCATCCCGGCACATAGGAAAAAAGCCAACAAAGAACTAGAAGAAAAGAACAGATTGCTGAAAGATAATCCTGAGCTGTACCAGCTATATAAAGACTTGGTTGTCAGTGGAGTTATTACTGCTGAAGAGTTCTGGGCAAACAGAGGAAAGGATACCCAAACTGTACAGTCAGACCAAGCTATTGGATTGTCATCAGCATTACTCGCAGATATGCAGCCTGAAAGCTCTGGCTGTAACGAAGTCAAGTACAATTTAAACGTGGACACTATTGAAGCAATATTTAAAACTTATCCTGCTGTGAAGAAAAAGTACCAGGAGGTCGTACCTCACGAGATGCAAGAGAAAGACTTTTGGACAAAGTTTTTCCAGTCACATTATTTTCATAGAGACAGGACGACATCACGTTCAACACCTGGAGACATGTTCACTGAGTGTGCAAAGGAAGATGAACATGAGCAACTGAAGAGGAAGCTAGCTGCTTTTAAAGATCCTTTATTGGACTTGACAGGAGCGTCTCCAGTTCCTGACGAGgGATATGGACTGACAGCAGAACTTATAGACCCAAAGAACAATATTGCAACTCAATCGTTGTTTAGAAGACTGAATCACCATAGTTTAATGGTACTCCAAAATTCAGTTCCTGGGTCCAGTACAGCtacagagaaagaaaaaaatggggaGAATGGTCACGAAAAAGACACAGCCCCTCCTGTTAAAAAGAGTCGTCTGCGTGAGATGGTGGAATACGATGATTTGGCTGAAGAGCAAGCGAGAGAGCTTCCAAGCTTAAAAATTGCTGATTCAACAAAATTTTCTCAAGGGCTTGTTCCGATGGTCCCCAAGGAAAGAAGACCTCTCCATACTAAAAGAACCCACGCAGATAACACCACAGCTTTGCTGTGCAACCAAAGAGACGTGGAACATTGGCAACCCAACCTGCCCGGGGCCCTCCCCAGTGACATGGCCTGTCATGTGCTCACAGAAATGTCTCCAGGAGGATCCTTGATGAGCACAACTTCGGAAACAAGTATGCAACATTTAGTCTCCTCTTCACTACAGAAGGAACTCAAGTTACAATATAATTCGCTGTCAGAGCTCCTGCGACATTTCTGGTCTTGCTTTCCTGTGAAGACACAGTTCCTAGAAGAAAAGGTTAGCCAAATAAATACTTTGTAACTTggtggtttgtttgtttgtttgtttgtttcttgtgaACAACGAGAGTTCAAACATGTTTGGCGCCTAAACAAGCCATTCACCCAAGAGGTCAAGCCCATAAATAtcgcaatgaaccaatcagaactcgaagtaaGCTCATGCAGCCCGTCCCAAGCGCGGGACAACGTTAATTTATGGTTtttgctctgattggttgacggATGTGCATGAGCTCAGCATGCGTAAAACCACTCCAGTCTCGACTCCAGAGCCTTCGGCTCAACCACTCGCAAAACGTAAGTAGTCTAAGTAAACACATCGGTAAAAGCGATTTCTCATCATCAGTAAAAGTGATTCTTCATCATAAATATAAAAGTGACGGATGGGTGCCTCAAAAAATTTATCTCGTGGTGAAATAGGGTTCGGGAATAGGCTTCACACAAAATCTTACTTTTTCGCGGTGAAAACCTATTAACCGCGATGAAAGGGAGTCAGCGTAGTGTAACCGAAGCTATCACTTACCTAGCCTTCAATCAGGCTCGGCGACTACGCGGCGATTGAGCCTTCCCCGAGCCGCCATTTACGAGCTGGCGAGTGATTTAGGGAAGCGAAACGGCTTATCTCGCGCGCACCAAAACCCGACTAGAGCCTGCTCACATCCTACCTGTGCCAGACTCTCGGTCAGTGGCGAGGAGCGAAAAAGCAGGCGAGCGAAAAACAGCGGGAAAACgggcgatgtagcagctgtcgtaaggtcttccacgattagtccgctaaacaatagaacaaacaaaagaaacaaagaacgaggcgtaaaaacaatagagctgctacatatagcggtccaatgaaaatacaagcttttgagaggtgctaatATACACTACCGGGGAAAACAGCTAatctctccccagcccccacGCGTTTTTCGCGCCAGTTTGCTTTTCCGactatcttggagcctggaacGGGCTAGCTCACATGCTATCCAGTTCTGGgtccggttgttcaaagcagagttaagctaacccaggattagcgtcaatttatatttcacttttaatccataacGACGTGGATTCCAGCAAATAAGTTTCACTTAACAATTTGActtggctgctttcaaattgtcacgTAAAATTGGCAGCGGTAACGCTTTTAAAAAAGAGAATCAGAAACCATGGTCAGCATTTAACCCAGAGTTAGCGCCAGCccgctttcgaacaaccgggccctggacccagttgttcaaagcaaggttaagctaacccaggattagcatcaatttttaattcacttttaatccataacaacatggattcctgtaaattattttcacttaacaaattaactttggctgctttcaaattgtcgCACGGAATAAGTAGCAGTAGtgcttttaaacaagagaatcagaaaccttaaACTACATTTAACCCAGGGTTAGCGCTAATCAGCTTTCGAACAATCAGGCCCTGgcgtttacctcggtgtaagaacctggcaagattttctttgtttgttagcttttgttttgctgtacggtatagtttaaaatgtttctgttttctttgtttgacgtcatccgtgagtttcacaggttcttacaccgaggtaaagcccagTTCTGTAGTGAAACGAAAACATTGCCACTGAAGTTGACGAATTTAAACATTACTTAAAAGCAATTTTGAGGTACTAATGATCGCTTCTGTTTATTTAACAGGTGGTTAGAATGGGCCAGAGCC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03909 all species →	BSD	BSD domain	Domain	Interproscan
PF08567 all species →	PH_TFIIH	TFIIH p62 subunit, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR005607 all species →	Domain	BSD domain	Interproscan
IPR035925 all species →	Homologous_superfamily	BSD domain superfamily	Interproscan
IPR027079 all species →	Family	TFIIH subunit Tfb1/GTF2H1	Interproscan
IPR013876 all species →	Domain	TFIIH p62 subunit, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12856 all species →	TRANSCRIPTION INITIATION FACTOR IIH-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000439 all species →	Cellular Component	transcription factor TFIIH core complex	Interproscan
GO:0005675 all species →	Cellular Component	transcription factor TFIIH holo complex	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0006360 all species →	Biological Process	transcription by RNA polymerase I	Interproscan
GO:0006366 all species →	Biological Process	transcription by RNA polymerase II	Interproscan
GO:0070816 all species →	Biological Process	obsolete phosphorylation of RNA polymerase II C-terminal domain	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03141	TFIIH1, GTF2H1, TFB1; transcription initiation factor TFIIH subunit 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.