Gene detail

Detailed information of FUN_001532-T2 in Acropora pulchra

Genomic Location: ntLink_6:13369404...13397334
NR annotation: XP_029200486.2, pre-mRNA-processing factor 40 homolog B-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_001532-T2

ATGGCGTCAGGAGGATATCCTCCGTCCACAGGAAGCGTTCAACCAGCTGGTTATTCTAGCAATCCACCTCCTGTAATGATGGCACCTGGAGGTTACGCGATTCCTGGGATGCCTGTGATGGCCCCTGGATATGTTCCTCCAGGAATGGCACCTTATCAGCCTGTTGCCATGACAACTGGTCAGCCAATAGCTTATGCTCATAGTGGTATTCCTGGGATGCCAACAGCGTATGCACCACAGTTAACATCAAGCATGCAGCAGCAACCGCCTGTGATGGGAACATTTCAGCCCATAACTAATACTGCATCACCAGCAGTGATGATTCCAGCAGCTGTGCCTACTCAGCAAGTTGTCACTGGAGGCTTGAACTCTCCATCTATTGTAAAGCAAATGCAAGAGCAAGAAAGCAAAGCAACTGACAGTCCCTCACAAACCAATAAGACTGAAGAGCTGGATGGCAAAGTTGAAGAAGTGAAAAAGGAGAAGAAGAAAGTCAAGAAACCAAAGCCGAAGGAAAAACAGACACCATGGACAGAACACAAGGCTCCTGATGGTAGAACCTATTTCTACAACACTGAAACAAAAGTGTCTACTTGGCAAAAACCAAATGAGCTTAAAACTCCTGGCGAGATTCAGCTTGACTCATGCCCATGGAAGGAACATAAAGCCAATACTGGCAAAATATATTACCACAACACAGAAACAAAAGAATCAACATGGACAATTCCCAAAGAACTGGCCGAACTCAAAGAGCTTATTAAGCAAGAGCAGGAAAAGGAAGGAGAGGAAGAAGAATCTGAAGAGGAAGAAGAAGAAGAAACCACAGAAAATGATGAATCAGATGGCAAAAAAGCTGATGAAGGAGCTAAACAGGATTATCCTATGGCAAGTGCTGTTAATGTATCAGAGGTACCAGCTGTGGTTACAGTGGAAAAGAAAGAGTATATCTATGAAACCAAGGAAGAGGCTAAACAAGCTTTCAAGGACCTTCTACGGGAAAAGGAAGTTCCATCAAACTCATCATGGGATAATGCTATGAGAATAATTGTCAGTGATCCCAGATATGGAGCATTGAAGAAGATGAATGAGAAGAAACAAGCTTTCAACGAGTACAAGACAAAGCGAGCCAATGAGGAAAAGGAGGAACAGAGACAGAAAGCAAAGAAGGCCAGGGAAGATCTCCGTAGCTTCCTGGAAAATCACAAGAAGATGCATTCATCAGTACGCTGGCGCAGAGCAGGAGAGATGTTTGAAGGCGAGCCTGAGTGGGAAGCAGTGCATGAACGAGACAGGAAAGATGTGTTTGACGATGTCGTGTTCTTCTTGGCAAAGAAGGAGAAAGAAGAAGAAAAAGAACAAAGGGCTCACAACAGGAAACTCATGTTACAGGTGTACAACACTATGTCTTCCATCACCTACAGGACAACATGGCTTGAGGCTTTGCAAATGCTTAAGGAGCATCCTTCATACAAAGATGATGAAGAAATACAAGATTGCGAAAAAGAAGACATGCTGATTGCATTTGAGGAACACATTCGTGCCTTGGAGCAGGAGGAGGAAGAAGAGAAACAACGTGAAAAGAACAGAGTCAAGCGACAACAGCGAAAAAACAGGGAAGGGTTTTTGGTGTTATTAGAAGAGTTACACAAGAGAGGCAAGCTTCATTCCATGTCACTGTGGGTTGATTTGTATCCAACAATAAGTGCTGACGTGCGATTCACCAACATAGTCGGTCAACCAGGTTCGACTCCACTGGATCTTTTTAAGTTCTATGTCGAAGACTTGAAAGCCAGATTCAGTGAAGAAAAGAAGATCATTAAAGAAATACTCAAGGATCTTGACTATACTGTTGATGTGAACACTGGGTTTAGCGAGTTCAACGAGCTGGTCAGGGGAGATGATAGAAGTCAAACCCTGGATCCCGGCAACGTTAAAATGACATTTAACCACTTTATCGAAAAGGCTGAAGCACGAGAAAAAGAAAGGGTGAAAAAGGAAGAAAGAGAGCAAAAACGACGAGAGAGTGCTTTTAGACAGTTACTAAAAACATGCAGCCCAGCTATTGAGGACAACTCAACCTGGGAAGAGGTGAGAGAAAGGCTTGATGGAGATCCCGCATTTACGGCAGTTACCGTAGAGGCTGAGCGCATCAGGATTTTTAATGAACACATTGCCACATTGGAGGCGTGTACGCATGTGCATTCAAAATCCCACAAAAAGGCCAAAAAGGCGAAGAAACACAGAAAACGATCGCGGTCACGATCGCCGAGTGAGGAATCTTCTCATTCGGAAGAGGAATACCCGAAAGAAAAGACCGCGTCACACAAAAAGAAACGGCACAAGCGGTCACGCTCCAAGTCACCCGTGTCATCTGCCTCGGAATCAGAACCGGAAAAGGAGGCCAGCTCTGCGAAAAAGAAAAAACATAAGAAGAAATCAAAGAAAAAGCGCCAACGCTCGCCTTCTGTTGAATCTGAGGGCGAGAGAGCTTACAAGGAGAAAGAAGCCAAAGAGCTGGATAGACGCGATCGAGACAGGGAGAGAGAAGAAAAAAGTGCAGATCGAAGCAGAGAAGCAGAGAAAGACAGGAGCCGTGACAGGGACAGGGAAAGGGACCAAAAAGACAAGAATCGAGACAGGGACAAGGAAAAGGACCCTGACAGAGCCAAAAAGTACAAGAAAGCTCAGGATAAGGTGCTGACCCAATCTCCGTGA

Transcript

FUN_001532-T2

CAAGACAAAACATCTGCTAAAACTTTCGCCTGAAAATGGCGTCAGGAGGATATCCTCCGTCCACAGGAAGCGTTCAACCAGCTGGTTATTCTAGCAATCCACCTCCTGTAATGATGGCACCTGGAGGTTACGCGATTCCTGGGATGCCTGTGATGGCCCCTGGATATGTTCCTCCAGGAATGGCACCTTATCAGCCTGTTGCCATGACAACTGGTCAGCCAATAGCTTATGCTCATAGTGGTATTCCTGGGATGCCAACAGCGTATGCACCACAGTTAACATCAAGCATGCAGCAGCAACCGCCTGTGATGGGAACATTTCAGCCCATAACTAATACTGCATCACCAGCAGTGATGATTCCAGCAGCTGTGCCTACTCAGCAAGTTGTCACTGGAGGCTTGAACTCTCCATCTATTGTAAAGCAAATGCAAGAGCAAGAAAGCAAAGCAACTGACAGTCCCTCACAAACCAATAAGACTGAAGAGCTGGATGGCAAAGTTGAAGAAGTGAAAAAGGAGAAGAAGAAAGTCAAGAAACCAAAGCCGAAGGAAAAACAGACACCATGGACAGAACACAAGGCTCCTGATGGTAGAACCTATTTCTACAACACTGAAACAAAAGTGTCTACTTGGCAAAAACCAAATGAGCTTAAAACTCCTGGCGAGATTCAGCTTGACTCATGCCCATGGAAGGAACATAAAGCCAATACTGGCAAAATATATTACCACAACACAGAAACAAAAGAATCAACATGGACAATTCCCAAAGAACTGGCCGAACTCAAAGAGCTTATTAAGCAAGAGCAGGAAAAGGAAGGAGAGGAAGAAGAATCTGAAGAGGAAGAAGAAGAAGAAACCACAGAAAATGATGAATCAGATGGCAAAAAAGCTGATGAAGGAGCTAAACAGGATTATCCTATGGCAAGTGCTGTTAATGTATCAGAGGTACCAGCTGTGGTTACAGTGGAAAAGAAAGAGTATATCTATGAAACCAAGGAAGAGGCTAAACAAGCTTTCAAGGACCTTCTACGGGAAAAGGAAGTTCCATCAAACTCATCATGGGATAATGCTATGAGAATAATTGTCAGTGATCCCAGATATGGAGCATTGAAGAAGATGAATGAGAAGAAACAAGCTTTCAACGAGTACAAGACAAAGCGAGCCAATGAGGAAAAGGAGGAACAGAGACAGAAAGCAAAGAAGGCCAGGGAAGATCTCCGTAGCTTCCTGGAAAATCACAAGAAGATGCATTCATCAGTACGCTGGCGCAGAGCAGGAGAGATGTTTGAAGGCGAGCCTGAGTGGGAAGCAGTGCATGAACGAGACAGGAAAGATGTGTTTGACGATGTCGTGTTCTTCTTGGCAAAGAAGGAGAAAGAAGAAGAAAAAGAACAAAGGGCTCACAACAGGAAACTCATGTTACAGGTGTACAACACTATGTCTTCCATCACCTACAGGACAACATGGCTTGAGGCTTTGCAAATGCTTAAGGAGCATCCTTCATACAAAGATGATGAAGAAATACAAGATTGCGAAAAAGAAGACATGCTGATTGCATTTGAGGAACACATTCGTGCCTTGGAGCAGGAGGAGGAAGAAGAGAAACAACGTGAAAAGAACAGAGTCAAGCGACAACAGCGAAAAAACAGGGAAGGGTTTTTGGTGTTATTAGAAGAGTTACACAAGAGAGGCAAGCTTCATTCCATGTCACTGTGGGTTGATTTGTATCCAACAATAAGTGCTGACGTGCGATTCACCAACATAGTCGGTCAACCAGGTTCGACTCCACTGGATCTTTTTAAGTTCTATGTCGAAGACTTGAAAGCCAGATTCAGTGAAGAAAAGAAGATCATTAAAGAAATACTCAAGGATCTTGACTATACTGTTGATGTGAACACTGGGTTTAGCGAGTTCAACGAGCTGGTCAGGGGAGATGATAGAAGTCAAACCCTGGATCCCGGCAACGTTAAAATGACATTTAACCACTTTATCGAAAAGGCTGAAGCACGAGAAAAAGAAAGGGTGAAAAAGGAAGAAAGAGAGCAAAAACGACGAGAGAGTGCTTTTAGACAGTTACTAAAAACATGCAGCCCAGCTATTGAGGACAACTCAACCTGGGAAGAGGTGAGAGAAAGGCTTGATGGAGATCCCGCATTTACGGCAGTTACCGTAGAGGCTGAGCGCATCAGGATTTTTAATGAACACATTGCCACATTGGAGGCGTGTACGCATGTGCATTCAAAATCCCACAAAAAGGCCAAAAAGGCGAAGAAACACAGAAAACGATCGCGGTCACGATCGCCGAGTGAGGAATCTTCTCATTCGGAAGAGGAATACCCGAAAGAAAAGACCGCGTCACACAAAAAGAAACGGCACAAGCGGTCACGCTCCAAGTCACCCGTGTCATCTGCCTCGGAATCAGAACCGGAAAAGGAGGCCAGCTCTGCGAAAAAGAAAAAACATAAGAAGAAATCAAAGAAAAAGCGCCAACGCTCGCCTTCTGTTGAATCTGAGGGCGAGAGAGCTTACAAGGAGAAAGAAGCCAAAGAGCTGGATAGACGCGATCGAGACAGGGAGAGAGAAGAAAAAAGTGCAGATCGAAGCAGAGAAGCAGAGAAAGACAGGAGCCGTGACAGGGACAGGGAAAGGGACCAAAAAGACAAGAATCGAGACAGGGACAAGGAAAAGGACCCTGACAGAGCCAAAAAGTACAAGAAAGCTCAGGATAAGGTGCTGACCCAATCTCCGTGAAGATCTTGATATTTTTTTCTCAATCTTTCCCAGCACAGGTCTCGGGAAGAAGTTCAAGTTGTCGACGAGAGCTGACATTGAACGCGAGGAGAAGATTTGGCTTTACTAATGCAAAATTCATTTCCAGAGATCGTATGCCCTTAAGGTCCTTCCCGTTGGTTTTTAGGAAGAACCAATCTGACCAGTCTTCTCCCGTTCTCACTTTGTGCCCAGAAGCGCACGAAAAAAGCCTTCTACGGTTGAAAACTGTTCTCATTCGAAAGTTAACCACCATACACTGTCTTTTTACCTAATGGAAGCAAGGCCTTTAAATATTTGGTAGAAAGAAGTAGTGTTCCTTCCAAGCACTTTCTGCTTCGTCTTGTGCAGTTAAGCTCATTTTTGTGTGGTGGTTTTATTTATTTCAAATAGCTCTTTTTCCCACCAATCCATAAAAAGGTGTAGAAAGTGGCAGAGGAGCATTGAAATCGACACTTCCCTGGCTGGAATGTCTATGAAAGAAATGAATTTGTCCAATTGGATCGAGAAAAGTTCCTTTTTTTACCTTAAAGGGTATTTCTCGATAATTTTTGGGCAAGCAATTTTATTTTGTGGTGCCGTCAGAATATTAATGTCCAGCAATGGAAAATGGTTATTTTAATTTATCGAAGAGAACAAAGTTGTTTTATTTTTGGAAGAAAAAGAGAAGAGAATGACCATATCCTGGAATTAAATATAAATAATTTGTAATTATGTTTCTATAGTTGTCCAAGTTTGTAACTTCTCTTGTTGGAATTAAAACTCTTCATAAAGTTTGCTTCGTCGTTTCTCTGGCGGGCCTCAGCTTGGTTATTCCAAAAAAGACAGGGCAGCTAGGAGAAAACTGGATATTCCTTTAACAAACGTTACGCCCTAATTTAGATTTAACCAGTAAACGGCGTTGAGCTTTTGGAGTTGTTAATATTCGATGCTTTGCCTACGCTGTTAGTTTGAAGTAAAGGTGATGGGTGGAAATTTCTGGCGCTTTTTTTAACCAATAGAAACGCAGTGGCAATTGCGACGTAAGATTCCCGTATTAGTTGCATTGGTTTATTTGGAAGCGCTCAATTTACAAACTGCATTTGAGAATTTCTTTACCTTTGTCCATTGCTGTAACTATGCTTAGTCTGTCGCGGGATTTCGTTCGTGGTACTAGTTCCTAATTTTTTCCTTTTTACTAGACAGAAATAGGGCATATGGTTCTGATTACTTATTGCAGCACTCACTGAAACTGAGTTGATCTTGGTGGGACAAAAGAGGAAGAATGTATAGTATTACTTTATTTGGTGTGTCGGGTTCATACCCGTTTCCATCCTTTCGTTTTCTTTGTGTTCCGACGCCCGTGACGTCTCTAGGTGCTTAGCGGATTTCACACCGAGGACTAATTGATATGAACAAACTTTAGACACCGAATATTCAGTCTGCAGACATCTCAGAACCTTAAAGATAATTCGGGAAGAGCATATGCAGGTTTGTCTTTTTTCTCAACCAGGAGACTTACAGTTGATTTGCTCGTTTCTTTTACAGAACCAGTGGGATACCACGTCTAGCGAGAGCGAAAGTGAATTGGAAAGCAGACGAAGAGCCCTGCTAAAACAACTTGGAGCTGCGGGAGACGCCTGATCCGTAAACGTCAAAACCACGTGCGCTGTACGGAAAGCAGCATATCATCTCTCAATTGAAATAGCAAATTACGTCATAGAACGTAATCTGTACTTAATCGTTTGTCAACGTTATTTTTTAGGTTTTGTCATTATTTGCATCCTATTTTAATCTCCTGCGTAGTAACAAAGGAGTCTGAAAACCTAGCCCTCCCTTGCATAGCGTGAACTCAAGGGGTTTTATGAGCTTAAAGCCCCGTCCTAGTGATGCAACTGTAGAAATTATGAAAGCCGTGTCAGTTATGACGTTATCACGATTGTTTAGTTGAGATTCTGTTAACATGAACCATTGCGTCGGTAATTAAACTTGACGTCCCTTACTCTGTAGAGATAGATAGTTGTGTTTTTGTTGTTGACACTCGTTTCTTGGGTTGTGTTGTCGTTAACAAGTCTGTACTGAGAATGTTCCAATTGTATTGTTGCTACAGATCCGGAGTTCAAGTCCCGCTTTGACCACCAGCTGAATTTGTTCCAGGTTGTCCGTGGTCAACTCCTCTGCTGCGCTTGCGTAAAGCCAGCTGATCGACCTCCCGCTATTTGGGATTCTTAACCTTTTAAGTTTATTCATTTCAGTACTTTGTTTCATTGGCTCTGAAAAGCCCCAGAGAGGAGAGGTCAATTCAGTATACATAAGTACACACACACACATACATAAGTTTTGCGACATAATTATTTCAAATGAGCCCACAAGGCTACATCCACTTTCCCATTTAATTCATATGTGGCTAAGTTCCTCATCCGTTGCTTGCACTAGCCAGTAAGAGGCTGATTGTCAGAGCAATTGACTTTACTACGGATGATTTATCTGGCTCGTGGACGGTCTTTGAGTTTAGGATTCACTCCTTCGTTCGTTTGTACGATTGATCTCCGAGAAAACCGCTCTTTAGTTGTTGGTCTGAATTGTTTCAATTATTTTCCGATATATTCGTTTTTGTTTCGAGTGCTAGCATTTGTTGCTCGTTTCTATAGATCGCAGTCTCTTTTTCACAGCATGAATTTCATGCTTAAGTTCTTCAACCGTGTACACTACAGGCAATCGACTGCAAAATTCACTTAATTCATGGATGGCATTTGTCAAACAGGTGTCGTCAGATTCCCGAATATTGCGCTTACTAAAAATCTTAGGGATAATAGCCTCGCACACGATGTGTAAATCTTGGTATTGCATTTCCGATGTGCAATACCCTGTAGTTGTATTACAGGCTGAGCAACAGATCTCGGACACCCCAGTCCAGCAGTCCGAGTCACAAGTACAATTTTTCTTTTTGAGAAGGTTCTTCACAAAAGTAAGCGGGTATGTTAAATCGAGATCAATGAATTTTACCAGAAAGTTACTGGTGTATCCGAAATTGTGAAGGTTCGCATCGCAGGAAATTACCAAACCGTAAGGATTGTTTGACAGTTCTAACGTGGCATCAATCAAAGAATACGCCAGCCTAAACTTTTCACGTTTGCTTGGGACATGAGTCGCAAGAAAAGTGTGAAGCATGAAGTTTATCTTCATAGGCAAATAATTTGGAAAATGAGCGCAAAGATATTGGAGAAAGGAAAACACTGCTTGTAAAATTATGCCGCCCAAGTTATCTATGGCAGTCTGAATGGGTTCAACTGCTTCGGGAAGAAATGAGAGATCAATCAACTCCCATTTTTCCTCAAATACTTTTGCAGTCACATGAGGAACTTTTTCAAGTACGTATAGGCCTGCGCAGTATCCATAGAAATCCACGGTGTGTTCACTGTTATTTAAGGCCATCAACATCATTGCTTCGTTTTGTTGGAGAAGAGACATGAATGACCTTTCCTCCGCTCCTGTTATTTCACCATCGTTGTCACTGTCACCGATTGAGACTAAAAAAGACACGAGTTCGCCGCATCGGGCACAATCCCCAAAAAGAGCTCTAACTCGCGTTGAAATATCGTTCTCGTACGATTTCACTTCTTTTCCCTTTGCAAATTCTTGACGTTTTTCCAACTCCTCAAACCAGCTCATGTTGATTTTCACTACCACTTCTCTTTCTCTCCAGTTAGCTCCGAAAATCGTTTTTGCTGGAACAATCGAGAGACACTCCGCAAAATGAAAGTTTTCGTGTACGCAAAGATCCTTGCATAGTGATCCAGAGACATCTCCCGCCATAAACGCTGAACACTAAAGAAAATGTGAAGGAATTCAACAGTATGTCCAGATGCATGTCGAAGTGTCCAGCCACCCTTTTCATTGACTTCGCTATCACTTCGAATACAAGCGAAAAATACGGTCAATAAAGGTCATAAAGTATCCTCCCACCTCGAGTTCTTAAAGAGGCCAAAGCAGTCGCCATAAACCTCTACACGAAAAACTACGAACGCCATTCTTAATATTAGAGAGCTTAAGCAACCACGACAATGACCATGGGTGACGAGAACGTCACAAATTCTCATATTTAACATGAAAAAAACAGTAGTTTTGCACGCTTTGCATAGACTACTTCTATTTCTGGTCATTTCGCAGTCGTTCTCGTCTTCCCCATGACGTGAAATGAGCTGTTCGGGAGTTTAGTATATGTGGACGACGTGAACACATGATGATTTGGTATCATCAGTTTGGAGAGAACAAGAAAAAATCTAAAATTAGATTGAATTTAATTCTAGGATACTTAGAGCATACATTTTGCAAACACAATGACGTGGAATAATTGGGAAATTATGGCAGGAACGCGAAGTTATTTTTATCAGATGACGTTATCGCTTTCGTCGGGGTTGTCCTTGCCTAAACTCACTGTTAAGGAAGATGGTTTACGCAGAGACATTTCGAGACGTTTTTTAAAATTGAGCATGCCAATAATTACGTGTATTCTTGAACATAATTAAGGTGGCAATTAGTCATCTGGCGCAAAAACTTCCTTGGCATCATTTCTGATTGGCTACTTACGATCTTTTCCAGGACTAAAATCATGTCACATTTGGAATGTGCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9R1C7	Pre-mRNA-processing factor 40 homolog A OS=Mus musculus OX=10090 GN=Prpf40a PE=1 SV=1
O75400	Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens OX=9606 GN=PRPF40A PE=1 SV=2
Q80W14	Pre-mRNA-processing factor 40 homolog B OS=Mus musculus OX=10090 GN=Prpf40b PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004797 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01846 all species →	FF	FF domain	Family	Interproscan
PF00397 all species →	WW	WW domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036517 all species →	Homologous_superfamily	FF domain superfamily	Interproscan
IPR002713 all species →	Domain	FF domain	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan
IPR039726 all species →	Family	Pre-mRNA-processing factor Prp40	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR001751 all species →	Conserved_site	S100/Calcium binding protein 7/8-like, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11864 all species →	PRE-MRNA-PROCESSING PROTEIN PRP40	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005685 all species →	Cellular Component	U1 snRNP	Interproscan
GO:0045292 all species →	Biological Process	mRNA cis splicing, via spliceosome	Interproscan
GO:0071004 all species →	Cellular Component	U2-type prespliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12821	PRPF40, PRP40; pre-mRNA-processing factor 40	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.