Gene detail

Detailed information of FUN_001559-T1 in Acropora pulchra

Genomic Location: ntLink_6:13741259...13744884
NR annotation: XP_044172601.1, E3 ubiquitin-protein ligase TRIM71-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_001559-T1

ATGGCTGTTCAACAACTCCTTAAGAACCTAAAGAAGGAAGCAGAATGTCCACTGTGCTTAGAAATACTGAAAAATCCTAGGACTCTGCCATGTCTTCACTCGTTCTGCCTGGAGTGTCTCGACCGGCAGGCAAAATTCGCAAGAGAACAGCTACAAACGTCAATCAGATGTTCCATTTGTCGGACGTCAATCGAAATTCCAGAAACAGACACCTTCGAAAACTTGCCCACATCATTTCACCTCAAGCGACTTGGGGATATTCTTGCTCTAACGGATCCTGCGGACAGCGATCGCGAGCAGGCTCGGGTATGCAACAGCTGTGAGGAGAACAATCCGCCAATATGTTACTGCTTCGTGTGCCAGAATTTTCTGTGTTCATCTTGTTTAGAATCTCACCGACGCTTGAGGGCTACAAGAGGCCATCGTAATGTTTTTCTCAATAATCTTCAAGCACAAGATGTGCAAGATCTGATGGAAAGACCTGTTATGTGTTCACAAAGTCATCATGAAGATCAACCCTTGGAATTTTACTGCAAAGACTGTAAACTTCTTATTTGCAACAAGTGCAGTGTTGTGAGACATAATCGACACAGCATAACAGACATTCACATTGCTGCTCAAGAACAAAAGATGCAAATTGCAGATACTGTGGACAAAGTGAACGCGGAAATAACCATGTACGAGAACGAAATAAAGAAGCAAAACGAACTAAGAAACAAAATCGAAACAGAAGTGAAGAACGTGGAAGAGGAGATAACACGGACTGTGAAAAAATTGATTGACGATTTACAAGAACATGAGCGGATCATGAAGGACAAGATTCGCAAAATTAATGAAGCACAACAAAAACAACATGAAGAAAGACTTGACATTTTAGAATGGAACACCGTCCAACTGAAAAGCTGTGTTGAACGATACCAAAGTATTATTAAAAGAAACAGCAGCAATGAAATTCTTCAATCAAATAACACCATTCTTGATCGCTGTAATGAACTGTTAAAAGTTCAAAAACCAGACATTTACAGGTCGCCGCATTTGCATTACTTTATCGTAAAGAATGTTGACATTGTGGATAAAGTTCTAGTCACCAACACTGATCCCTCGATGTGTTTAGCTGGATGTCGAGGAAGCAAAGAAATAATAGAGAAGAACGAAACGACCTTTGTAGTTGTGACCAGGAATTCGGAGGGATTTCCATGTTATCAACAAGATGATCAAGTCGAAGTTGGGATTTTTACTCCAGACAATGGTGAACTAAGACCGAATATTCAAGATACCAAAGATGGGCGATATACTGTAACATACACGCCACAATGTGCGGGACGGCATCGAGTGCAGATTCAAGTGAATGGTCAGCCGCTGGCTGGTAGTCCTTGGTTTGTGCCGGTCAATCGGCAAAGGTACCTGTATGAATTTTCGTTTGTGTTTGGATCACAAGGGAACGGACCCGGAGAGTTTAACCAGCCATTCGATACAGCCGTGAGTCGGAAAACGGGAGCGATTGCTGTCCCAGACATGCAAAACAAAAAAATTCAACTGTTCTGCTCCGATGGAAAGTTCTTAAGGGAGGTAAGAGTCGTCAGTGAGCCTTTCTCCGTGGCATTTACAGATATTGGTCACTTGTTAATTTTAGTTCCTGGGAGCGATAATAAGCTTCATTTGATGAGTGAGGAAGGCCAGTTGATTCGTTACATAAATGATAAACATCTTGAGCAACCCGAACATCTTTCTGTGGCGAGTGATGGGCGTATAATCGTGTGTGACTTGGCAGGCGACAAAATCAAGGTGCTCTCCCCTGACGGGAATGACTTGCTTCAGTCCTTCATTGCACCAGGCTGCGATTCGTACCCATACGGAGCCATTTGTCATCAGGAGAAATATTTTGTTTCGTACCCTGATTCTCATTGTGTCAAGGTATTTGACAAAACAGGGAAGTATTTATTTGACATAGGCTCTAAGGGATCCAGAGATGGACTGTTTCGTTGGCCCCGTGGACTCATCATCGACAAGTACAATCAACTGATTGTAAGTGATGCGAATAACCAAAGGCTGCAATTCTTTACTTTGGATGGCACATTTTTACACAAATTACAAGGAGACTTTTTCTCCAACGGCTGTCCCTTGTATGTAACCATAAGTAACGATGACAGTCTTTTTGTTGCTGACTTTCAGAAACATTGCATAATTGTTTTTAAGTAG

Transcript

FUN_001559-T1

GTCATTTCATTGCTTTAGGCACTCAGATTTATGTGCTGCTGCAAGGCTATACTATGGCTGTTCAACAACTCCTTAAGAACCTAAAGAAGGAAGCAGAATGTCCACTGTGCTTAGAAATACTGAAAAATCCTAGGACTCTGCCATGTCTTCACTCGTTCTGCCTGGAGTGTCTCGACCGGCAGGCAAAATTCGCAAGAGAACAGCTACAAACGTCAATCAGATGTTCCATTTGTCGGACGTCAATCGAAATTCCAGAAACAGACACCTTCGAAAACTTGCCCACATCATTTCACCTCAAGCGACTTGGGGATATTCTTGCTCTAACGGATCCTGCGGACAGCGATCGCGAGCAGGCTCGGGTATGCAACAGCTGTGAGGAGAACAATCCGCCAATATGTTACTGCTTCGTGTGCCAGAATTTTCTGTGTTCATCTTGTTTAGAATCTCACCGACGCTTGAGGGCTACAAGAGGCCATCGTAATGTTTTTCTCAATAATCTTCAAGCACAAGATGTGCAAGATCTGATGGAAAGACCTGTTATGTGTTCACAAAGTCATCATGAAGATCAACCCTTGGAATTTTACTGCAAAGACTGTAAACTTCTTATTTGCAACAAGTGCAGTGTTGTGAGACATAATCGACACAGCATAACAGACATTCACATTGCTGCTCAAGAACAAAAGATGCAAATTGCAGATACTGTGGACAAAGTGAACGCGGAAATAACCATGTACGAGAACGAAATAAAGAAGCAAAACGAACTAAGAAACAAAATCGAAACAGAAGTGAAGAACGTGGAAGAGGAGATAACACGGACTGTGAAAAAATTGATTGACGATTTACAAGAACATGAGCGGATCATGAAGGACAAGATTCGCAAAATTAATGAAGCACAACAAAAACAACATGAAGAAAGACTTGACATTTTAGAATGGAACACCGTCCAACTGAAAAGCTGTGTTGAACGATACCAAAGTATTATTAAAAGAAACAGCAGCAATGAAATTCTTCAATCAAATAACACCATTCTTGATCGCTGTAATGAACTGTTAAAAGTTCAAAAACCAGACATTTACAGGTCGCCGCATTTGCATTACTTTATCGTAAAGAATGTTGACATTGTGGATAAAGTTCTAGTCACCAACACTGATCCCTCGATGTGTTTAGCTGGATGTCGAGGAAGCAAAGAAATAATAGAGAAGAACGAAACGACCTTTGTAGTTGTGACCAGGAATTCGGAGGGATTTCCATGTTATCAACAAGATGATCAAGTCGAAGTTGGGATTTTTACTCCAGACAATGGTGAACTAAGACCGAATATTCAAGATACCAAAGATGGGCGATATACTGTAACATACACGCCACAATGTGCGGGACGGCATCGAGTGCAGATTCAAGTGAATGGTCAGCCGCTGGCTGGTAGTCCTTGGTTTGTGCCGGTCAATCGGCAAAGGTACCTGTATGAATTTTCGTTTGTGTTTGGATCACAAGGGAACGGACCCGGAGAGTTTAACCAGCCATTCGATACAGCCGTGAGTCGGAAAACGGGAGCGATTGCTGTCCCAGACATGCAAAACAAAAAAATTCAACTGTTCTGCTCCGATGGAAAGTTCTTAAGGGAGGTAAGAGTCGTCAGTGAGCCTTTCTCCGTGGCATTTACAGATATTGGTCACTTGTTAATTTTAGTTCCTGGGAGCGATAATAAGCTTCATTTGATGAGTGAGGAAGGCCAGTTGATTCGTTACATAAATGATAAACATCTTGAGCAACCCGAACATCTTTCTGTGGCGAGTGATGGGCGTATAATCGTGTGTGACTTGGCAGGCGACAAAATCAAGGTGCTCTCCCCTGACGGGAATGACTTGCTTCAGTCCTTCATTGCACCAGGCTGCGATTCGTACCCATACGGAGCCATTTGTCATCAGGAGAAATATTTTGTTTCGTACCCTGATTCTCATTGTGTCAAGGTATTTGACAAAACAGGGAAGTATTTATTTGACATAGGCTCTAAGGGATCCAGAGATGGACTGTTTCGTTGGCCCCGTGGACTCATCATCGACAAGTACAATCAACTGATTGTAAGTGATGCGAATAACCAAAGGCTGCAATTCTTTACTTTGGATGGCACATTTTTACACAAATTACAAGGAGACTTTTTCTCCAACGGCTGTCCCTTGTATGTAACCATAAGTAACGATGACAGTCTTTTTGTTGCTGACTTTCAGAAACATTGCATAATTGTTTTTAAGTAGAGAATTGATCCTCTTGTTAACCTTTTTCGATATTAAACGCTTGGATAGTTTTCTATGATCACTCTTGGATGACATAAAGAAAGATATGAACATTAGAAGCACCTCGGTCAGACCTAACATGGACCATCAAAGTAAAAAAGAAATTAAAATACGTAGTTCGACCTATTTAGATAAAAAGAAAATGCTATGAATCTCAAATAGATGACTGCTTCGCGAGCTTCATCGCAGCACAGGATACCCAAGCTCAAATAGGTCTCTCGATGCGTTATGTATAAGTATTGTTATGGCGTGTATAAGTATTGTATCCCTCCGCTAAATGGTAAACAAAAGGAGATGAGAGAAATAAAGGCCATGGTGGTAACCTACCGCATAAAAAGATGTCCAGTTGTTGTTTTTAGTGGCTGGAAGCTTATTTTTTCACCCTTTTCAGCACATCCGATACAGTCAAATTTTTGTGTTTCATATCCTGATGCGGTACCGTAGTTTCTTTAATAACCTCACTCTCGGTAGATCATGTTTACTCGCTTATTTACTACCACGAAGCAAGGTTTATATTGCAATAGATATCCACGAAAAGTATGTACAGTGAAGCTAAAAGGCTGTTCAACAGAGAGGAGTCTGTGGGCTAATGTAATCGATATCTTATAATAACAAAGTCACAGGGAAACCAAGCTCGGACTCTTATTTATTGTGCCTGCGCAGATGAAACGGCCCACCAATAAGAAAAGGTAAAAAAAAACGAAACCGCATAAGCATAATATTTTTTTACTTAAACCAAAGGGGAAAGAAGGGGATGTTACAAAAAGAAAAAAAAACTGATGTGGCTCCGGCCAGGCTCGAACTGGCGACCTTCTGCGTGTAAAGCAGACGTGATAACCACTACACTACGGAACCATCTCACTAGCAACGGCGATTTTTATTAAATTTAAATCAATTTAACAGTATACCACTTACTGCTCATAATTTACTGTCAACGAGCCGGAGGCAACATTTTCTCGCCAGATTTCTCGAAATTGTACCGCAGCAAGATTCAAATGTCTTTGTTTTTGCGCATGGAATTGGCTCAGCTCAAAGGCATGCATTCTCACACACGACCAAACATCGTCAAACTCGTGGTAACAGTCCTCTATTTCCTCCCTCCTTTATACTGCGAGTAGTAGTAGGTAGTGGTTGTAGTTAGTAGCTTCATAGCTCAGTTGGTTAGAACGTCGCACCGGCATCGCGCGGTCACGGATTCAAACCCCGTTGAAGCCCTGACTTTTTCAGGCTTCTATACACAATTGCTTAAATTGCGTTCATAACTGTGAGGATCATGACTCACTTGATTTCAAATCCGCAGTTCAATGTATGAAACATTTCATGTATCACTTCCGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F7H9X2	Tripartite motif-containing protein 2 OS=Callithrix jacchus OX=9483 GN=TRIM2 PE=3 SV=1
Q9C040	Tripartite motif-containing protein 2 OS=Homo sapiens OX=9606 GN=TRIM2 PE=1 SV=1
Q9ESN6	Tripartite motif-containing protein 2 OS=Mus musculus OX=10090 GN=Trim2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000293 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643 all species →	zf-B_box	B-box zinc finger	Domain	Interproscan
PF17170 all species →	DUF5128	6-bladed beta-propeller	Repeat	Interproscan
PF13445 all species →	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF00630 all species →	Filamin	Filamin/ABP280 repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR017868 all species →	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR027370 all species →	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR047153 all species →	Family	TRIM45/56/19	Interproscan
IPR001298 all species →	Repeat	Filamin/ABP280 repeat	Interproscan
IPR001258 all species →	Repeat	NHL repeat	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462 all species →	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_001559-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.