Detailed information of FUN_001614-T1 in Siderastrea siderea

Genomic Location: contig_1:23490837...23495072
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05018
all species →		CFA20_domCFA20 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007714
all species →		DomainCFA20 domainInterproscan
IPR040441
all species →		FamilyCilia- and flagella-associated protein 20/CFAP20DCInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12458
all species →		ORF PROTEINInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_001614-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_001614-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_001614-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
64TPM > 0
7Conditions
445.8Max TPM
128.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 16 159.21 445.79
holobiont · low.pH Control.temp 20 13 134.34 366.22
holobiont · control.pH_high.temp 20 15 138.97 391.10
holobiont · control.pH Control.temp 19 14 116.70 237.49
Whole organism 4 4 5.04 7.34
unannotated 1 1 5.07 5.07
live coral tissue/skeleton 1 1 6.38 6.38

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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