Detailed information of FUN_001634-T1 in Siderastrea siderea

Genomic Location: contig_1:23718919...23733700
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15612
all species →		WHIM1WSTF, HB1, Itc1p, MBD9 motif 1MotifInterproscan
PF00439
all species →		BromodomainBromodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001487
all species →		DomainBromodomainInterproscan
IPR029614
all species →		FamilyChromatin remodeling regulator CECR2Interproscan
IPR036427
all species →		Homologous_superfamilyBromodomain-like superfamilyInterproscan
IPR028942
all species →		DomainWHIM1 domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47092
all species →		CAT EYE SYNDROME CRITICAL REGION PROTEIN 2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0006338
all species →		Biological Processchromatin remodelingInterproscan
GO:0007338
all species →		Biological Processsingle fertilizationInterproscan
GO:0090537
all species →		Cellular ComponentCERF complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_001634-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_001634-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
74TPM > 0
7Conditions
644.8Max TPM
253.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 18 249.25 512.97
holobiont · low.pH Control.temp 20 17 196.34 498.07
holobiont · control.pH_high.temp 20 17 279.90 549.39
holobiont · control.pH Control.temp 19 16 351.30 644.82
Whole organism 4 4 62.79 66.71
unannotated 1 1 43.77 43.77
live coral tissue/skeleton 1 1 33.20 33.20

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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