Detailed information of FUN_001764-T1 in Colpophyllia natans

Genomic Location: contig_2:8037816...8038580
NR annotation: XP_020604713.1, collagenase 3-like [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O62806Collagenase 3 OS=Oryctolagus cuniculus OX=9986 GN=MMP13 PE=2 SV=1
P45452Collagenase 3 OS=Homo sapiens OX=9606 GN=MMP13 PE=1 SV=1
P23097Collagenase 3 (Fragment) OS=Rattus norvegicus OX=10116 GN=Mmp13 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01471PG_binding_1Putative peptidoglycan binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR021158Binding_sitePeptidase M10A, cysteine switch, zinc binding siteInterproscan
IPR036365Homologous_superfamilyPGBD-like superfamilyInterproscan
IPR024079Homologous_superfamilyMetallopeptidase, catalytic domain superfamilyInterproscan
IPR021190FamilyPeptidase M10AInterproscan
IPR002477DomainPeptidoglycan binding-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10201MATRIX METALLOPROTEINASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004222Molecular Functionmetalloendopeptidase activityInterproscan
GO:0030198Biological Processextracellular matrix organizationInterproscan
GO:0030574Biological Processcollagen catabolic processInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan

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