Gene detail

Detailed information of FUN_001957-T1 in Acropora pulchra

Genomic Location: ntLink_6:18283838...18311520
NR annotation: XP_015774978.1, PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X2 [Acropora digitifera]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_001957-T1

ATGTCCTCGAAAAAGAAAAAGAGTGAAGGGCGATCGGGGGACTCGGTAGAACAAGCTGCGGAAATTTTTCAGGCTGTGATTCTTTCAGATAGTTTTAACTTCAGATTTTTACCAATAACTCTCGAAACTCCCAGGGTCTTGCTGCCTTTGGTTAATGTCCCTCTTCTGGATTACACCATTGAATTTCTTGTTGAAGCTGGAGTCCAAGAAATATTTGTTTTCTGCAGTGCTCATGCTGACCAAGTTAAAAAGCATATTAGTCAATCAAAATGGACTGGTGCTAGATCGCCTTGTGATGTGAAAACTATTGTAGTTGAAGACTGCTTTTCAGTTGGAGATGCTCTTCGAGAAATTGACAGACAGTCTCTTCTGAAAAGCGATTTTGTCCTAGTAAGTGGGGATGTGGTCTCTAACATGAAATTGGAGCAAGTTTTCCAAGAACATAAGGAAAGAAGAAATATAGACAGATCGTCTCTAATGACCATGGTATTCAAAGTTGCAAACCCTGGACACAGAGCAAGATGTCAAGAGGAAGACCTTATAGTTGCAATGAACTCAAGAACAGGAAGAATTCTACATTGTGAAAAGACAGCTAGCAAGAAACGGTTCTCATTTCCTTTGAGTCTATTTAATGGCAATGAAAATCTTCAGATCCGATATGATCTTTTAGACTGCAACATTTGCATATGCTCAACAACGGTTCCACAGTTATTTACAGACAATTTTGATTACCAAACCAGGGATGATTTTGTGAAAGGAATTCTTGTGAATGAAGAGATAATGGGGAATCAAATTCATTCATTTCTGATTAGCGACAAATATGCTGCTAGAGTTTCCAATCCATACATGTATGATACCATCAGCAAGGATATACTCAGTCGATGGGCTTATCCAATAACTCCAGATAACAGCGTGTTTTTCATGGAGTTTTCCTACTCCTTCACAAGGCACAATGTCTATTTGGACACTGAACTATCTCTTGCAAGGGACTGTATTTTAGAAGAAAATGTGTTAATAAGCAAAGGCACCTCAGTTGGCGCAGGGACTGTCATTACCAATTCTGTTATCGGCAGAAACTGTGTTATAGGTGATTCTGTTCAGCTAGATGGAGTTCACTTGTGGGATAATGTAACGGTAGAAGATGGGTGTAAAATTTCTGAGGCAATACTTTGCAAAAATGTTCATATAAAAAGAAACGTTACAATTTCATCTGGTTCGCTGATTTCTTTCAATGTAGTCGTGGGCCCTGATTTGGTTCTCCAGCCAGGAGTAAAAATTACAAGAAAGAAACAGAGGAAAGAGAATGATTCCGACTTTGGTATGGAACAACCTCTTCAAGAGAGGTCTGCCCCTTATGAAGACGATGGGTTTATTCCTGAAGAAGTGGGAGTCGAAGGGCGAGGCTTCACGTGGCGACCAGATGCTGATTCCGATGATGAAAAGGAAGAAGTACAAGACATTTGGGGTATGGAGAGAATTAGCTCAAGTGAAGATGACGTGAGTTCCGTGTCTAGCAATCAAGATTCAGCTCCCGAAAGCCCGCCACCCGAGGACAGCAGATTATTTTACACAGAAGTCCTGGAATCAATAAGAAATGGAGTGGCTAATAATGTGGTTCCTGAAAATATCATTTTGGAGATAAACGCCTCTAAGCTTGCATATGACGAGACGTGTCAGGAACTCAATCAAGCGGTTGTTAAGTCTTTGTTGGAATCATGTCTTAATGATCCTTCTTTATCGAAACAAGATCATTCCAAAAACCTCAAAAAGACAACAGAAGATCTACTGCCCGTCATCTCTAAGTACATCAAAACAGCTGATGGCCAAAGAGACGCTCTGAACGCAACAGAGGAGTTCTTCCTGCAAACGATGTGGGCTGCTCCTCTTTTTCAAGTCTTTCTGCACATGTTATACGACAAAGAAGTCCTTGAAGAGTCTGTTATTCTCCAGTGGTACTTACACAGAAGAGGAGACATTAGCTGTTTCGAACCCCAGCGAAAAAAATTACGGCAACAGATTTCTCGTTTTATCACTTGGTTACAAGAAGCTGAGGAAGAAAGCGATGAAGAAGACGACGACAACGACGATGAAGCTGATGATGAAGGCACTTCAAGAAAATGA

Transcript

FUN_001957-T1

GCGCCATATTTGCCAGAAAGGAAAAATTAGGGAGATTAGTATGTCCTCGAAAAAGAAAAAGAGTGAAGGGCGATCGGGGGACTCGGTAGAACAAGCTGCGGAAATTTTTCAGGCTGTGATTCTTTCAGATAGTTTTAACTTCAGATTTTTACCAATAACTCTCGAAACTCCCAGGGTCTTGCTGCCTTTGGTTAATGTCCCTCTTCTGGATTACACCATTGAATTTCTTGTTGAAGCTGGAGTCCAAGAAATATTTGTTTTCTGCAGTGCTCATGCTGACCAAGTTAAAAAGCATATTAGTCAATCAAAATGGACTGGTGCTAGATCGCCTTGTGATGTGAAAACTATTGTAGTTGAAGACTGCTTTTCAGTTGGAGATGCTCTTCGAGAAATTGACAGACAGTCTCTTCTGAAAAGCGATTTTGTCCTAGTAAGTGGGGATGTGGTCTCTAACATGAAATTGGAGCAAGTTTTCCAAGAACATAAGGAAAGAAGAAATATAGACAGATCGTCTCTAATGACCATGGTATTCAAAGTTGCAAACCCTGGACACAGAGCAAGATGTCAAGAGGAAGACCTTATAGTTGCAATGAACTCAAGAACAGGAAGAATTCTACATTGTGAAAAGACAGCTAGCAAGAAACGGTTCTCATTTCCTTTGAGTCTATTTAATGGCAATGAAAATCTTCAGATCCGATATGATCTTTTAGACTGCAACATTTGCATATGCTCAACAACGGTTCCACAGTTATTTACAGACAATTTTGATTACCAAACCAGGGATGATTTTGTGAAAGGAATTCTTGTGAATGAAGAGATAATGGGGAATCAAATTCATTCATTTCTGATTAGCGACAAATATGCTGCTAGAGTTTCCAATCCATACATGTATGATACCATCAGCAAGGATATACTCAGTCGATGGGCTTATCCAATAACTCCAGATAACAGCGTGTTTTTCATGGAGTTTTCCTACTCCTTCACAAGGCACAATGTCTATTTGGACACTGAACTATCTCTTGCAAGGGACTGTATTTTAGAAGAAAATGTGTTAATAAGCAAAGGCACCTCAGTTGGCGCAGGGACTGTCATTACCAATTCTGTTATCGGCAGAAACTGTGTTATAGGTGATTCTGTTCAGCTAGATGGAGTTCACTTGTGGGATAATGTAACGGTAGAAGATGGGTGTAAAATTTCTGAGGCAATACTTTGCAAAAATGTTCATATAAAAAGAAACGTTACAATTTCATCTGGTTCGCTGATTTCTTTCAATGTAGTCGTGGGCCCTGATTTGGTTCTCCAGCCAGGAGTAAAAATTACAAGAAAGAAACAGAGGAAAGAGAATGATTCCGACTTTGGTATGGAACAACCTCTTCAAGAGAGGTCTGCCCCTTATGAAGACGATGGGTTTATTCCTGAAGAAGTGGGAGTCGAAGGGCGAGGCTTCACGTGGCGACCAGATGCTGATTCCGATGATGAAAAGGAAGAAGTACAAGACATTTGGGGTATGGAGAGAATTAGCTCAAGTGAAGATGACGTGAGTTCCGTGTCTAGCAATCAAGATTCAGCTCCCGAAAGCCCGCCACCCGAGGACAGCAGATTATTTTACACAGAAGTCCTGGAATCAATAAGAAATGGAGTGGCTAATAATGTGGTTCCTGAAAATATCATTTTGGAGATAAACGCCTCTAAGCTTGCATATGACGAGACGTGTCAGGAACTCAATCAAGCGGTTGTTAAGTCTTTGTTGGAATCATGTCTTAATGATCCTTCTTTATCGAAACAAGATCATTCCAAAAACCTCAAAAAGACAACAGAAGATCTACTGCCCGTCATCTCTAAGTACATCAAAACAGCTGATGGCCAAAGAGACGCTCTGAACGCAACAGAGGAGTTCTTCCTGCAAACGATGTGGGCTGCTCCTCTTTTTCAAGTCTTTCTGCACATGTTATACGACAAAGAAGTCCTTGAAGAGTCTGTTATTCTCCAGTGGTACTTACACAGAAGAGGAGACATTAGCTGTTTCGAACCCCAGCGAAAAAAATTACGGCAACAGATTTCTCGTTTTATCACTTGGTTACAAGAAGCTGAGGAAGAAAGCGATGAAGAAGACGACGACAACGACGATGAAGCTGATGATGAAGGCACTTCAAGAAAATGACTTTAATAAACATTTTAACTTGCATCTGTTGTGTGAAAAGAAATCTAGGCGGTCGATAGACATTTCAGCCTTGGCGATGGGCTAGGCGAAAGTTGTGATTCACGCTTAGACTGAAAGCGTTTACGAAACATTGCAAAACCGCCCGTCGGCAAGTGTCGACTGCGTTATGCTGACGAGACCTGAGCAGACCTAGATAGCTGCCCATGGTTGCCTGGCATCTTCTCGCAGGCTGAAGACAAGAAATGTTCTGCCACTGAGGTGGGCTTAGACCGAGTGTTGGGGTTGTCTAGTGCACGTCTGTGTTCATTGAGGCAGTCTTTTAACTAAATACGTTAGGTATTTTGTAAGACGCCATGTAGAGATTAGTTGAACGTATTTCGCCCATAGAAGAGAAAGTATAGTTGATGCAGCCATGGGAAATGTAAGGACAGGTGGCATAGTTTTTTCACAGTGAAAAGAAGCGGGGTGGAGTGGGACATCAGAATTAGACAGTTTAGCTGTAACTAGTAAGGCGCGAAGGTAATGCATGGGGAGCGTCTAAAAGCCACAACAGGTAGATGCTGGAAAGCTAATGTGCAACCTCAGATGAAACAAGTAAATTAGTATGTATATCAACCATGTGTGGGGTTTATATGGAGCATTTCCAAGGCTTTGGATGCGAGCAACCCAAGAAGGGTGTAATCAACCTCGTTCCCAGGGTCCTTTCTCTATTTTGAGAAAGTACCCGGGGTGTGGCTGGTCACGTGGCTGCTAGATTTTAGCAGATTCCAAAGATATGATTGAAGGGAGGGGCTGGAAAGTTATAGTTTGTCTACACTGATCTCACCTACTGAGACTTTTAGGGAGTGGAATTTGTAAAACTCCCCTTGTGGATCGGCAAAATCTCACAGCGAAGGCATTGTCACAATGCTTTCAATGCTCGGCTAAAAAGTTAGCTCTACATTTGGCTGAATTTTTCCCATCGACAGTTGGACGGTCTTTGGAGTTTGTGGCGTTTAAAAATTTTTGGCAAAGAACTTGGAACTGAAAACCACAGCAATAAATTAACCGCGTGGTGAACTTAATTTTACTTTTCATTCGTATATATTTACTCATTCGTTTAGAGTCAAACGCGCCGTATGTTCCCCTCAAAGGTAGTTTTGGATTTGATTTAATTATTCCCATCGACAGTTTGACGGTGATTCCCTTCTCTTGCAGCGAAAAAAATCTACGGAGAATTTGACAACAACGTCTGCGCGCTAAATAGGCTTGATTAAGCAGCTTATATTTTTCGATCGGCAAAATCATAACGCAGGCATGGAACCATTAGTTTAGAGTTTGATACGTCCAGTGTTTGGTAGAGGCTAGCTTTGAATTTGATTGAATTCATCCAATCGAAAGTTTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P47823	Translation initiation factor eIF2B subunit epsilon OS=Oryctolagus cuniculus OX=9986 GN=EIF2B5 PE=1 SV=1
Q8CHW4	Translation initiation factor eIF2B subunit epsilon OS=Mus musculus OX=10090 GN=Eif2b5 PE=1 SV=1
Q64350	Translation initiation factor eIF2B subunit epsilon OS=Rattus norvegicus OX=10116 GN=Eif2b5 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004723 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02020 all species →	W2	eIF4-gamma/eIF5/eIF2-epsilon	Repeat	Interproscan
PF00483 all species →	NTP_transferase	Nucleotidyl transferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011004 all species →	Homologous_superfamily	Trimeric LpxA-like superfamily	Interproscan
IPR003307 all species →	Domain	W2 domain	Interproscan
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR044123 all species →	Domain	Translation initiation factor eIF-2B subunit epsilon, W2 domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR005835 all species →	Domain	Nucleotidyl transferase domain	Interproscan
IPR051956 all species →	Family	eIF2B Complex Subunit Epsilon	Interproscan
IPR035543 all species →	Domain	Translation initiation factor eIF-2B subunit epsilon, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45887 all species →	TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0031369 all species →	Molecular Function	translation initiation factor binding	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005851 all species →	Cellular Component	eukaryotic translation initiation factor 2B complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03240	EIF2B5; translation initiation factor eIF-2B subunit epsilon	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.