Detailed information of FUN_001966-T1 in Siderastrea siderea

Genomic Location: contig_2:1937159...1949502
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00643
all species →		zf-B_boxB-box zinc fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000315
all species →		DomainB-box-type zinc fingerInterproscan
IPR037688
all species →		FamilyZinc finger B-box domain-containing proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR28634
all species →		ZINC FINGER B-BOX DOMAIN-CONTAINING PROTEIN 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_001966-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_001966-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
33TPM > 0
7Conditions
252.7Max TPM
17.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 6 19.81 252.69
holobiont · low.pH Control.temp 20 6 14.23 116.86
holobiont · control.pH_high.temp 20 9 20.58 209.02
holobiont · control.pH Control.temp 19 6 19.10 251.64
Whole organism 4 4 10.02 11.94
unannotated 1 1 4.41 4.41
live coral tissue/skeleton 1 1 8.56 8.56

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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