Gene detail

Detailed information of FUN_002003-T1 in Acropora pulchra

Genomic Location: ntLink_6:18801196...18803745
NR annotation: XP_015760457.1, PREDICTED: calcium-dependent protein kinase 1-like [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_002003-T1

TCACTGTTTTGCGAACCAAGAGAAAAATGGCGCGTCGTTTCGCGAAAGTTTTAGAAGAAGAAATTGAAGAAGCGTTTTTTTATCCGTCTGATTTGGTAAATACTAAAACAACTATCCCCCTCAGGGTCGGTGAAGAGCGGTGGATATATATGCCTCGACGCTTCGCGTCTCTCTGTTTTATATCACATTGTGTCGTGAACGTGGGAAACCTACGCAAGAACAGTGACCTTAATCCCTGAGGAATTAGTTATTGACAATAGACCAATCAAACGCTTTAATTTTTTGAGACAGGAAGTTGACAGTGCAGCTTGCATTCAAGAAAAAGTTTTCACACATTAAACACGTGAAGATGGACCAGAACGAAGATCGAGAGAAAGGAAGAAGGCTGTATTTCAAAAAACTTCGAAAAGAACAGAAAAAGCGAAGAGAGGAAGAAAGGAAGAAAAGCGAGGAGCGAAGGAGGAAGAAGTTCGACGAATTAGTTGACAGCATTAGAAGTAGATTGGCGAAGGGTGAAGAACCAGAACCAGATCCAGGATCTTTGGAACTCTTCGACGCCGACTTGGAAGTTAGATTAGGCAACCATCCGCAAAAAACGTTACCCTTACCTTGTGAAAAAGCAAGTGAAAACAGTAGCAGCACAGTAGCTAACGTTGAACAAGCGGATGCGGTGCCACTTGCTTGTTTACATTCAGCCACCGCTTCGTCTCCCACATCGGAGGAGGATAGCAACGGCATAAAAGAGATTTCACAGAACAGTGTTGTCAAACTGCAAAAATCTCTTTCATCCGGTGCGTTTGGTGCTTGTTATGTGGCAAACTATAGGGGCATGGTAGTGGCGGTTAAAGAATTGAAAGTTCTTGGACATTCACAACAGGAAATCGCGCAGCAGAGAAAGGAAGTCATTCACGAGGCTACCATTATGTTGCGACTTGGCGATCATCGTGGTTTGCCCCTTCTGTTTGGAATCCAGAGCAAAGTCACCCCGTTTCGAATTATTATGCAATTCCACGGAATAAATGACAAGTCATTAACAATACGGCGTGCTGTCAGAAAAATTAAACTTAGCAACGAGGAGTGGAAAACCGTCGTGGACCTCGTCGGCAGAGTCCTTCAGTTCATTCACTCCAAAGGCGTTCTCCATAATGACTTGAAGGGAGACAATATTTTGCTCGAGAGGAGGGAGAAACATTACAACCCCGTTGTCATAGACTTCGGAAAAAGCACGTTTATTGACGAAACACCCGAGCGAAAAATGTGCATGTCTACCAAGGAGCAGAAAGAATATATTAAAAAATATCCGCACGTGGCACCAGAGATTGTTTCTGGGAGGTCATTTTATAGCATAGCCAGCGATACATACTCCTTTGCTAAATTGATTGACTTCCTCTGTGACAAGGCTCGTTTAAATTTGAGAAGCGCCAAACGCGTGCTGGCTAAGCATTGTGCCCTTGGAGCAAACCCTGCAGAGCGGCCACCTATTAACGAACTTATTCAAGATACCGTACTTGGAGATTAGAGACACTTGCGCATTAAACTTTTAGTGATTGTTTTCTAAAGAAAACTGAAAAGGATTTACCTAGGGCGAACTGCGTTGATGTTTTGACGGAGCAGGACAGTTTTAATAGCGCTCCTCTTTTAATCTGATGCAAAATTCTGAAGTTTACTCGAAATTTGAATTTTGAAAAGTTCCAGTTGCCCTCTATGGCGTGAAGCTTAAATGTGAAATCGAAGGTGTTTTTAGTTTTAACAGAAGTAACGAAATTTCGTAAACTAGTCTTTCACAAGTATTTTTGGATACATTTGTCGCCTTCGCTTTTTCCGTAACAATATAGTCGTCCTTTGTGTGAAGCTGAAATATGAAATCGAAGGTGCTGTTAGTTCAAAGACGAATTAGAAAATTTTAGAAAGTTGTCGTTTTCGCGTTTTTAAATGTAACCACGCACGCTTGCTAATTATGAGTCCCCTGTACGCAGTTTACGGTATACGATAACTATTAATAAATCACTATTTTAATTATCCACTTGCCTTGTTGCGGGCTCTGATTTTTGTATTTGAGTGGCAACACTTCCGCATTATGTTCACAGACTCCAAAGATAGAACGAGCCGGCACATCTTCATATATAAACCACCTTCTTAAAGTACTGCAATCTGGCTTTTAAATTTGGCCACGGATGGGATCGTTTGTGAAATTGCGCTTCACAAATGATCCAATCTTTCTGGTTGCAGAGAGGTTCCAAACACCCTAATAGGACCCTCTAGAAAATTTCATTTGCTGCACACTTGTTGATCTCTGGTAATATCGAACGTCCTGAGCTCTCTATTTGTGAGTAATAAAGATATAACAGTTCATTCTGGGTTAATTCATTGTGTATATAAGTGGGTTAAAACAACTGATATGAACCTCTAAAAATACATAGCTTCACTGGGATTTAAGTGACCACTTAAATATCGTACGCGTAGGGCGATATCGTGATGTGTTTCCTTCTCTTTTAAAAGTTAAAAAATACCATTATAAGTGGATTTAAGAGAGCAAATAACCATTATTCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P54734	Serine/threonine-protein kinase PknA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=pknA PE=3 SV=2
Q2MHE4	Serine/threonine/tyrosine-protein kinase HT1 OS=Arabidopsis thaliana OX=3702 GN=HT1 PE=1 SV=1
Q9ZVM9	Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana OX=3702 GN=At1g54610 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000161 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR050205 all species →	Family	Calcium-dependent Serine/Threonine Protein Kinases	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24349 all species →	SERINE/THREONINE-PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004683 all species →	Molecular Function	calcium/calmodulin-dependent protein kinase activity	Interproscan
GO:0005516 all species →	Molecular Function	calmodulin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0009931 all species →	Molecular Function	calcium-dependent protein serine/threonine kinase activity	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0046777 all species →	Biological Process	protein autophosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_002003-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.