Detailed information of FUN_002187-T1 in Siderastrea siderea

Genomic Location: contig_2:4838427...4840533
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03148
all species →		TektinTektin familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR048256
all species →		FamilyTektin-likeInterproscan
IPR000435
all species →		FamilyTektinsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19960
all species →		TEKTINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0015630
all species →		Cellular Componentmicrotubule cytoskeletonInterproscan
GO:0060271
all species →		Biological Processcilium assemblyInterproscan
GO:0060294
all species →		Biological Processcilium movement involved in cell motilityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_002187-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_002187-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
30TPM > 0
7Conditions
1,059.9Max TPM
112.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 6 168.43 886.50
holobiont · low.pH Control.temp 20 4 50.02 419.37
holobiont · control.pH_high.temp 20 8 155.68 1,059.95
holobiont · control.pH Control.temp 19 6 96.33 592.25
Whole organism 4 4 48.00 72.57
unannotated 1 1 33.61 33.61
live coral tissue/skeleton 1 1 49.71 49.71

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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