Gene detail

Detailed information of FUN_002217-T1 in Acropora pulchra

Genomic Location: ntLink_6:22528317...22536276
NR annotation: XP_044180343.1, LOW QUALITY PROTEIN: uncharacterized protein LOC122961643 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_002217-T1

ATGGAGGAAGAATCCGATATTGTGGAGTTTCAGAAGGTCATCAGGGAACTTGTAGAGGCTGGAGTAGACATCAACTGTCAAGACATTGAAGGGTCCACGTGTCTTCACCACACTGTCGGCAGAAAAGGTAGAACATCAAGCCATCTAAAATTCCCTGATTTCACGCGAGTGTTGCTTGATGCTGGGGCTGACAGAAACGCAAGAGATATCGATGGTAATACTCCAGCGCATATTGCTGCAGAAGGAGAAGACGCTGACCAGTTAAGAATGCTGGCATCTGAAACATGGCAAGACTGTCCTAATCTCAATGGAGAAACTGTGAAAGACATTTTGTGTAGAAAAGTCACATTGGCAAAAGAGCGACAGAAAATTGGCGTAAACTTTGAGTTTGCAGCTGAGACATTATATTTCGTTGAAGATATGATGACGGACTGCAGATTTGGAGACGTTACTGTCGACATTATTGAAACGCTGGACAGAAAGGTTCCACAAGCAATAAGGGCGAGTGGGCTCACCGACACGATGATTTATCCAGTTCCCGCGTTGTTGAGTATCCTGAAGAAAAATGTAGAACTTCCCTTAACGAAAGTTTTAGAAGATCTCAACGAAGCGAAAGTACACACAAATTATTCCCACGTAGGTTCTACATGTTGTGTACATCTGCGCACTGACTGCGCTGCTTTGAAGCCAAAGCAGGTGGGTTTACTACCGTTACTGTGGAAGACGGGGCACCCCTGCGTTCTGGCAACACGGATTGAGCAACTGATGTGGGAATTTGTCCAGTCTAAGCGACACCGTTCTTCATCGCCTTTCAACTTGCCTCCAGCACCAGAGGCTGTGACACATATCATCGGGGACATTCTCCGTGCATGCAGAGACAACACGGTGGGAGAATTCCATTTTGAAGATGAACAGTGCGGTCACGAAAGATGCGAAATTGGAAGACAAGTGAGAGAACTCGTTAGTGACTTGGTTAACGCAGTGGAACAAATGGACCATCGTTTGCAGTGCAAGCTGATATTAACAGGAAGTGTAGCAGAAGAGACAAAGCTGTGGAAACCAGACGAATTTGATTTCATGATGGAGCTGACTCAGCTCAAGGGACACAGCAGGCTCGAGTATGCAGGTTTGTCTAGATCATCCAATACCACTGTTATTTCATTGGATGATGAGATGAAAGAAATGTGGCGGGAATTTTTAAAGGATGACTGCCTTTCACCTGAGAAGTTGAGAGATTACTTTGTCTTGCTGACTTGGAGAGCAGGGTTTTCACTACAGCAGCAGAACTACAAGAATCTGAGTTTTAACTTGAGCCAGCAGTCTGGGGGAACTGGGAGCAGCCATCCGTTGGTTAGGATGAGTTCAGTCGGTGTACTTCTACATGTTCAGTGGCATGGGTACGATTATACGTCATTAGATATTGATGTTGACCTAACTCTATCTGTACCGTTCTCTGATTGGCCAGTCCTTCTCCCGTCAGACCGCAGCCCACAGCCAGCACCAGCAATATTCGACACGACCGTGGGATATCACGCAATAACAGATGGAGCTTATTGGCGTTTGTCTTTCTCCTTGGCTGAGCTGAACGTTGTCCGAAACCGGCTCTCCCCAGTCCACAGAGAGCTGTACAAGGCTCTCAAACTGTTACGAGACATTCACATAAGGGAGGGAGGCACCCCGTCACAAGCACTCAAGTCGATTGTCTTCAATTATGTCTTCAAAGAGAACGCTGAGGCTACCCTTGAAAAGCCGACAGGAAAAACTGCAGCTGCTAGCGCTTACCTTCCGGAATGTAATTTAGAACGAAATCTTGGAGACCTCTCTGACGAAATTAGAGAAAATATTGCAGCTGCCTGTACTATATCCCCGGAATGTGATCTGTCAGGAATGTCGAGGATTATCCTTACGAAATCAGAGGTAGCTACCACTAAGAAAGGGGAAAAGAGAGTTGGCAAGGCCAAGTCCGGGACGGCCGAGACTGCCAAGAGGAGACGGGGAAAGAGAAAGGAAAGCTATGCGATCTACAAATATAAAGTGTTGAAGCAGGTTCATCCCGACACGGGAATTTCCAGCAAAGCCATGGGTATCATGAATTCTTTCGTCAACGATATTTTCGAACGCATAGCCGTGGAGTCCTCACGTCTTTCGCTTTACAACAAGAAGGCCACCATTAGTTCAAGAGAGATCCAAACAGCGATAAGACTTTTGCTTCCCGGTGAACTTGCAAAACACGCCGTCAGCGAGGGTACGAAGGCCGTGACCAAATATACCAGCAGCAAGTGA

Transcript

FUN_002217-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35067	Histone H2B OS=Acropora formosa OX=126732 PE=3 SV=1
P07795	Late histone H2B.2.2 OS=Psammechinus miliaris OX=7660 PE=3 SV=2
P07794	Late histone H2B.2.1 OS=Psammechinus miliaris OX=7660 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002756 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03281 all species →	Mab-21	Mab-21 protein nucleotidyltransferase domain	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00125 all species →	Histone	Core histone H2A/H2B/H3/H4	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR000558 all species →	Family	Histone H2B	Interproscan
IPR046903 all species →	Domain	Mab-21-like, nucleotidyltransferase domain	Interproscan
IPR024810 all species →	Family	MAB21L/Cyclic GMP-AMP synthase-like receptor	Interproscan
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR007125 all species →	Domain	Histone H2A/H2B/H3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23428 all species →	HISTONE H2B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000786 all species →	Cellular Component	nucleosome	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0030527 all species →	Molecular Function	structural constituent of chromatin	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_002217-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.