Detailed information of FUN_002318-T2 in Siderastrea siderea

Genomic Location: contig_2:6770300...6779385
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Transcription factor familyESR-like · all TF in this species
Transcription factor familyMiscellaneous · all TF in this species
Transcription factor familyNGFIB-like · all TF in this species
Transcription factor familyRXR-like · all TF in this species
Transcription factor familySF-like · all TF in this species
Transcription factor familyTHR-like · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00104
all species →		Hormone_recepLigand-binding domain of nuclear hormone receptorDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR033544
all species →		FamilyNuclear receptor subfamily 0 group B member 1/2Interproscan
IPR000536
all species →		DomainNuclear hormone receptor, ligand-binding domainInterproscan
IPR035500
all species →		Homologous_superfamilyNuclear hormone receptor-like domain superfamilyInterproscan
IPR001723
all species →		FamilyNuclear hormone receptorInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24081
all species →		NUCLEAR RECEPTOR SUBFAMILY 0 GROUP BInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000122
all species →		Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0003714
all species →		Molecular Functiontranscription corepressor activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0008134
all species →		Molecular Functiontranscription factor bindingInterproscan
GO:0043433
all species →		Biological Processnegative regulation of DNA-binding transcription factor activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K08546NR2E3, PNR; nuclear receptor subfamily 2 group E member 3-Nuclear receptorsko03310deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_002318-T2 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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