Detailed information of FUN_002323-T1 in Siderastrea siderea

Genomic Location: contig_2:6812519...6837623
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12796
all species →		Ank_2Ankyrin repeats (3 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036770
all species →		Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR002110
all species →		RepeatAnkyrin repeatInterproscan
IPR051637
all species →		FamilyAnkyrin repeat domain-containing protein 49Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24180
all species →		CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_002323-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_002323-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
56TPM > 0
7Conditions
330.6Max TPM
52.9Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 11 44.42 222.70
holobiont · low.pH Control.temp 20 16 85.43 266.71
holobiont · control.pH_high.temp 20 12 41.08 179.77
holobiont · control.pH Control.temp 19 11 56.19 330.64
Whole organism 4 4 2.52 2.75
unannotated 1 1 0.82 0.82
live coral tissue/skeleton 1 1 2.61 2.61

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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