Detailed information of FUN_002488-T1 in Siderastrea siderea

Genomic Location: contig_2:9859043...9859693
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14493
all species →		HTH_40Helix-turn-helix domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029491
all species →		DomainHelicase Helix-turn-helix domainInterproscan

 PANTHER
No PANTHER signature was detected for FUN_002488-T1. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
No Gene Ontology signature was detected for FUN_002488-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_002488-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_002488-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
27TPM > 0
7Conditions
178.6Max TPM
8.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 5 20.71 178.60
holobiont · low.pH Control.temp 20 5 4.75 41.44
holobiont · control.pH_high.temp 20 6 5.63 100.52
holobiont · control.pH Control.temp 19 5 2.25 14.75
Whole organism 4 4 2.37 3.79
unannotated 1 1 0.12 0.12
live coral tissue/skeleton 1 1 2.35 2.35

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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