Gene detail

Detailed information of FUN_002736-T1 in Acropora pulchra

Genomic Location: ntLink_8:5836686...5864114
NR annotation: XP_044182355.1, RNA helicase Mov10l1-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_002736-T1

ATGTTCGGGCTATACTCAAAGCTATCAGAGTTTGTATGGGGATGCGAGGAAAGTGAGGATACAAATAGTCAAGCGTCAAAGCGCAATTTACGTGAAAAGAGAACTGTGTCTAAAGGCATCGCCGATGATGTTCGATGTTCGCGCTTCTCACAAAATCCTAACTTTAAGAAAGAACTCGTAGGCAAAGTGACTCGGTTATATGATGGTGCGGGGCTAATTGACGACGAGGTCTACTTTACGTTTGATAAGGTTATAGGCGGAGAGAGACCGGAACTTGGTACAGAAGTTCTTGCAGAGGCATTTCGTGAGTCGGAAATGGCGGGCTGGAGAGCTGTGAGAGTCCAGGTGATGTCAGAATGGAAGCTTGACGAAAATGAGAAGCCTGCCTCTGTTGAAACTTTGATTGGTTCAATAACAAACATCGCGCATGATTCTGGAGTGGTGGATAATGAAATTAGTTTTAAAATGTCGTGTGTTCGGCAGGGCTATGTGCCTTTTTCTGGAGACTGGGTCAAATTAGATGTGGATCGAGCAGCAGATGGGACAATGGAAGTCACTGGAGTGATGCCTCTGCGTGAAAAGAACTTCACAGGGGTGGTGACATATGTGTCTTGTGGGGTTGGTTACATTGATGGAGAAGTGTACTTTACTTGTGGGGTTTGTTCACGTGGGTATCGCCCTCGAAAAGGTGACACTGTTAAGACAACAGCTATAGAGTCCAAGCAGGGGAAAGCTGTGTGGAGAGCTATTAAAGTTGAACCAATACGAACCACTTCTTCAGTACTGAGTCCTTCACCGCGTACTCAGCAGTTCATGGGAGGTAAAATGGCTGAGCTTTTGAGCAACAAGGAAGGGATAGTGATAACTGATCAATTGGATGTAGGAGAAGTCCACCTTGGAGAATCAAGAATGCTGATTATATGGATAAGCAACCAGAGTGAAAAAGGACACATTTTTCAATCTTGCCAAACAATGAGACAAGATGACCAATTCTCTCTTCAGCTCAATTCTAATGATCATTGGACCCAGTTGGAAACAACAGAGAGACCTAAAGGAAATGAAACTGTTTCGGTGGAGGAAATGTTAGTTCAGGGATCTTTGTTAGCACCTGGTATGGAAATCCCAGCCAATCAGGCCAAGCAAACCACTGTTACGTTCATTGCCAAAAATCTTGGTCGAGTAAATCACCTTTTGGTGTTTGCATTTAATGGCTTTGAGATTGGACGATATATTACTGCTGATGTGCGCGACCCTCAGCAGGCGATTTTGAAACCATCCACTCCATATCAACGATGTTACACTCAAACTAAACAAGCACAGCAAAAAGTTGCAAACGGATTCAGTGGAGATGATGCCATTATACCAGGAGAAAAGATCCTCAGAAAGCGGAAGTTATTTCTTCCGGTGAAGCTAGGACAGTATAACATACCAAGAGACATACGAAGATGTATTCTTGAAGGTCGAGATTTGGGGACTATTGTCCAAGCATTGAGAGAGCCATTGTCCTTGAAGAATTATGCTGCCAGGTTCTCAACGTTGCTTTATGCCGAAGAGCTTCAAATGGAAATCGATATGAGACAGTTTGACATAGATTCGGTTAGTATGAATGTCTGCGGTGATTATCTGAGTCTTCAAATTCCCGGGTTAGCTGAAGGCAGGCCCTCACTCTTGCTCGGAGATAAAGTCATTGCATCGTTGACAGGAAGCTCATCAGATGCTCCTAAATACGAAGGCTTCATTCATGAGGTTCGTAAGGATGACATTTTGCTGAAGTTTAACGAGGAATTTCACAACCGATTTGCCATGCAAGAATGTGACGTGATGTTTTGTTTTAACAGAACCACACTTCGACGAGCTCATCGAGCAGTGGAATTTGCCCTTTCATTAGGGGAACCAGTGCTTTTTCCACGAAAGTTATCGCCCAAGTTACCTGTCTTCAATCTCACGACGAGTGATTTACCGACGACAGAGCAGCGTGCCGAGGAAGATTTTCTGTATAACTCATCTTTAAATGAGCGCCAAAGGGCAGCTGTGTGTCGCATCGTCAGTGGTCAGTGTCGACCATCGCCTTATCTGTTGTTCGGTCCACCTGGGACAGGCAAGACTATCACTGTGGTGGAGGCTATATTGCAGATTTTTCGAAAAATTCCTTCAAGCAGAGTGTTGGCTTGTGCCCCCTCAAACAGCGCTGCTGATTTGATTGCAGAGCGCCTTCATCGCAGTGGTTTCGTTCTGGAAGGGGACATGGTGCGATTAAATGCAATCCAGCGAGTACAAGATATCCCAAAATCCATCGCGCGATACTGTACCGACACAGACCATCTGGACACGGCTGCGCACTACCGCATCATAATCAGTACCTGCAGCACAGCTGGTCAGCTGTATTCCCTGGGATTGCGAGCTGGTCATATAACGCATGTGTTCGTTGACGAGGCAGGCCAAGCTACTGAGCCTGAGTGTCTCGTTGCTGTTGGACTGGCAGCAGGGGATGATGGACAGGTAATTCTAGCAGGTGATCCGTTTCAACTCGGCTCAGTCCTCCAGTCTCGCGTAGCCTCTTCTTTCGGATTAAACGTCTCCTTACTGGAACGCTTAATCAACAGACCGCTGTACTGCAGGAATGAGGCCAAGTTTTCTGATCATGGCTGTTATGATCCTTTGTTGGTTACTAAGCTAGTCAATAATTACCGCTCACATCCTGCTGTACTCAAGCTTCCCTCCGCGGTTTTTTACCACGATGAGTTGGTGCCGTGTGCAAATGAGTGTATGAGAGAAAGCTTATGTCACTGGGAAAAACTTCCAAAGAAAGGATTTCCGGTTGTTTTTCACGGGGTCCAGGGAGAGGATCTGCGGGAAGGGAACAGTCCTTCCTGGTTCAACCCCGTGGAAGCTGTGCAAGTTGTCAAATATCTTCAAGCTTTAAAATCAAGCGATAAACTGTCCATCAAACTGAGCGATGTTGGCATTATTACGCCGTACAGGAAACAGGTTGAAAAGACTCGTCTTTTGCTTGCCTCTGTGGGGCTAGATGAAGTGAAAGTAGGATCTGTTGAAGAGTTTCAAGGCCAAGAAAGACTGGTCATCATCATTTCAACAGTCCGTTCTAACGCCTCATTGGTTGGGTCTGACGTTCGTCACACCATTGGGTTTCTTAGCAACCCCAAGAGGTTTAACGTAGCAATTACTCGTGCCCAGGCATTGCTCATCGTTATTGGAAATCCACACGTCCTTTTTCAGGATCCATACTGGTGCTGTCTAGTCCAGTATTGTGTTGTTAATGACTCTTATATCGGATGCGATTTGCCCTCGTTGGATCAGCATTTTGTAAAGGAGGAATTCCAGGCAGCAACGAATCTGCTCAGTAACATTCTATTAAAAGACGAAATTAATAGAAATGGGGATTTTACCAAGGGTGAAAGCAATTCAGTGTTACAAGACTTGAATGAATCTAGTAATTGTACACAAGCCATTTCTAACGAGTCCAATATGCAGAGCTGCAACGGTGAAGACATCTCTTTGGTATCGGAGCCGCAAGAACAAATTGAATCTTCCAGCTCTAACAACACGCAAACGAGTAACAAGGGTGGCACGTTGAATATGCAGGACAAACCGTTTGCTGGACCTTCAGTTAGTTCAGGAGCAGGTCCCACCCTAACAAAGGAATCTCAACAGCTTTGCGTTTCATCCGAGGTTCCGTCTGATTCTGACGATGAATTGGAGCAATTTGTGCTTCAACCGAAGGGAAGCCGTCAAAAAAATATCAGACTTTGA

Transcript

FUN_002736-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BXT6	RNA helicase Mov10l1 OS=Homo sapiens OX=9606 GN=MOV10L1 PE=1 SV=1
Q99MV5	RNA helicase Mov10l1 OS=Mus musculus OX=10090 GN=Mov10l1 PE=1 SV=1
P23249	Putative helicase MOV-10 OS=Mus musculus OX=10090 GN=Mov10 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000828 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13086 all species →	AAA_11	AAA domain	Domain	Interproscan
PF21635 all species →	Mov-10_helical	Helicase MOV-10, helical domain	Domain	Interproscan
PF13087 all species →	AAA_12	AAA domain	Domain	Interproscan
PF14444 all species →	S1-like	S1-like	Domain	Interproscan
PF21634 all species →	MOV-10_beta-barrel	Helicase MOV-10, beta-barrel domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR041677 all species →	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan
IPR049079 all species →	Domain	Helicase MOV-10, helical domain	Interproscan
IPR047187 all species →	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR041679 all species →	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR025223 all species →	Domain	S1-like RNA binding domain	Interproscan
IPR045055 all species →	Family	DNA2/NAM7-like helicase	Interproscan
IPR049080 all species →	Domain	Helicase MOV-10-like, beta-barrel domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10887 all species →	DNA2/NAM7 HELICASE FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0035194 all species →	Biological Process	regulatory ncRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0043186 all species →	Cellular Component	P granule	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13983	MOV10L1; RNA helicase MOV10L1	EC:5.6.2.5	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.