Gene detail

Detailed information of FUN_002876-T1 in Colpophyllia natans

Genomic Location: contig_3:9203095...9212444
NR annotation: KAJ7334472.1, hypothetical protein OS493_014789 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_002876-T1

ATGTTTACTGGCGTTCATATCCTTGTATGGAGCTTAGCCATTTCAGTGACATCACAACAAAGGCAACCGCCCCCTGAACCTGGGAGTGGTGATGGTAGAAGCGGCGATAGTGGAAGCAGTCCTGATGGTGGAAGTGGTTTGGGACCCTCATTTTTGTGCTCAGTAGCAGGGAACTGCAGTTGTCAGTTTGACGACTTCGGTGATACCGTGAAATGTACGTCTGTGGGCAATAATCTTGACGAGATTGCACAAAAACTTCCGAAAACGACGACGCATTTAATTCTGAGGAACAACGGAATATCCAAGCTGTCACGGATTGGTCTTGGTCATTTTGAACAACTACAAGTCCTGGATCTCAGAGACAATCACATCGCTACAACCAGCATGCAGGTGCAATTAATCCTTGGAAGGTTATCACGAGTTTTACTTGACAACAACCCATTGGAATGTGACTGTGCCATAAAACCTTATTTATTTGAGCTGGTTATAGTTACCGGGACATGCGCGTATCCGCATCATTTGAGAGGAGTCAACATAAGCACTATTCATCCTGAAGATTTCCAATGTGCCGAGAACTGCGAGACTCTTTTCATCCGCGGACGTCGTTCTGATGGTCTTTACAATCTGCGCACACCAGACATCATTAGTGAGCTTACCAGGCAGCTGAATCACTTTCGGGCTTGGTGCGATATGAGTGGCCCTAATGGCGGATGGCTCGTGATTCAACAGCGCATCAACGCGTCCGTCAACTTTGCAAGAGACTGGACTTCGTACGAAGAGGGTTTTGGCAGACGTGGTTTTGAATTCTGGCTTGGAAACGTTTACATACTTGGTATAACGTTCAAGGGAGAACACATGCTTCGAATAGAAAAATCGGTTTCAATTAATGGGCGCAACCGAACTTATTTTTTTGAATACGACAATTTCCGCGTGTCGCGTCCATTCGACTACTACATCCTTCACGTGGGGAAATACCGGGGCAACCTAAGTGACATTCTGTCGGGTGCCAATAACTCTGCATTCTCCACTTGGGATCGCGATAACGACATGGTGAACGGATCATGCGCACGCATCAATAAAGGAGCCTGGTGGTACGGCAGAACCTGTAACATTCAAGACCTGAACAGTATGCTAGGAAATGTTACCAAAGGAAGCCTGGTTAAGATTACTATGAAGACAAAGCAAGTTTGGCGAGGCCTCTGCAATTCAAGTACAACTTCTGGTAGAGTTGAATGTGGATGGCCAAACATAACACGGAAGCAGTGTTTGTTGCGTGACTGTTGCTATGACAATAATGCAACTGATGGTGTACCATACTGCTTTGTCAAGCCCCACTTAGTGTTTCTTGAGAGAATAGGCTGTTTCTCCATGGAAAAAGGACTGATTAAGCTGCTGAGGAATCAACAGCCTGCATTCAAAAGATCACATCTTGTCCAGGCCTGTGGCTCTGCAGCTTGGTCACGTGGTCTCAGAGTGTTTGCAGTACACAATGGAAGAGAGTGTCTTGGTTATTCAGATGTCTCCGCCACATTGCCTCGGCTAAAAGTTTCACCAGGATGTCTGGGAGGAAAAGGAGGACAAAACGCGACAGATGTTTATCGCTTTACAATTTTCATGGCCAAGCTAACCGGACTCAGAGCTAGCTACGTGACATTCGAAAGTGTGCGTATAGAGTGGAAACCAGTTCCAGAACTCTTCATTCTCGGCTACAAAGTTCTAGTGCAAAATACTTCTTTCAGCCAGTTCGTTACCTGGAACGTGAACTCTTTCCTTATCGAAGGTCTCCATAGCAACACTCCTTATGTTATAACAGTGTTTCCAGTTCATGGTTTGGTAATTGAAGGGGTCGCTCCACACAGTTCCCAAAGCATCGTTGTTACCACAGAAGCGAATCCAGGTAATCCGTGTCGCAGCTTACCATGTCGTAACAATGGAACCTGTCAATCACCTGGTGATGGTGTGCTCTGTGAATGTCCAGATAAATTCGATGGTGAATTCTGTGAGATTTTTATATCCGCCCCCACCGCGCCGCCTGGTAACGTTTTCGTTATAGCAGCAAGCCCTACAAGTCTGTTGATCTCTTGGACCAGTGTTCCGGAACCACATCGCCATggagatatttttcattttaatgtttATATCAGCCTTGCCAATAAACAGAACGATTCTTCTAAAGTCTATGTCTCTGAGTCAAcgcaaacctatgttaatgacCTCCAGGTCTACACGCTTTACGTGATTCGTGTTTCGGCGGTAAACGATATTGGAGAAGGACCCAAAAGTAATGCATTTACAGCACGAACAATGGCAAGCGCTCCATCTAGAGCTCCTGATTTGGTTAGCGCGTTCAACACAAGTTCCACTAGTCTGGTGGTGAAATGGACTGGCGTGCCAAAGCAGTATTTCCGAGGAAAGCCTATTGGATACAACATTACTTATAACCCAACTGAAAGGGATTTTAAGTTTGTGAGTGTCAACTACACAACGAACACCATAACCCTTACGGACCTGGCTGTGTATACCATGTACGTCGTTAATGTGTCAGCAGTGAGTTCTGGAGGAGTGGGACCTGCAAAATCGACTTTTGCTTCAACAGATAATCCGTGTCGCCGCTCACCGTGTCGTAACAATGGAAAGTGTCAATTATCTGGCGATGGTGTGTTCTGTAAATGTCCTGAGAAATTTGTTGGTGACTTCTGTGAGATTTTTGTATCCGTCCCTACTGCGCCACCAGGTAAAGTCCTCGTAACAGCAGCAAGCACCACAAGTCTTTTGGTCTCTTGGAGTAGTATTCCGGAACCTCATCGTCATGGAGATATTTTTCAGTATAATATTTATATCAGCCTTGTGAATAAACAGAACGATTCCTTTGTTAAAGTCCATGTCTCTGAGTCAACGCAAAGTTATGTTGATGACCTCCAGGTGTACACTCTTTACGTGATTCGTGTTTCTGCGGTAAACGAAATCGGAGAAGGACCCAAAAGTAAGGCATTTACAGCGCGAACTAAGGCAGGCGCTCCATCTAGAGCTCCTGACTTGGTAACCGCGTACAACACAAGCTCCACAAGTGTGGTTGTGAAATGGAGTCACGTGCCAAAGCAGTATTTCCAAGGAAAGCCAATAGGATACAATATTCGTTATTACCCAGTTGATTTGAAGAGGAACGCAATCTCTTTCATTGTCAGCTACACAAAAAATACCACAGTCCTTACAAACCTCACAATCTATACCTTGTACGTCATTAATGTGTCAGCGGTGAGTTCAGGAGGATTGGGGCCTGGAAACATGACAATAACTCGAACAGACGCCGAAGGTACAGAGTTCTTTAATGTAGTGATAAACGATACCTTCAGTACCAATGACGAAATCAAATGTGCTCAAGAAAAGCTCAACAAGAGGTTGCTCAAAAATTGTCAATAA

Transcript

FUN_002876-T1

Protein

Uniprot

Uniprot term	Description
P57756	Ficolin-2 OS=Rattus norvegicus OX=10116 GN=Fcn2 PE=2 SV=1
O70497	Ficolin-2 OS=Mus musculus OX=10090 GN=Fcn2 PE=2 SV=2
E9PV24	Fibrinogen alpha chain OS=Mus musculus OX=10090 GN=Fga PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00147	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF01463	LRRCT	Leucine rich repeat C-terminal domain	Family	Interproscan
PF00088	Trefoil	Trefoil (P-type) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961	Domain	Fibronectin type III	Interproscan
IPR002181	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR014716	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR044913	Homologous_superfamily	P-type trefoil domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR000519	Domain	P-type trefoil domain	Interproscan
IPR050379	Family	Type I Cytokine Receptor	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR000483	Domain	Cysteine-rich flanking region, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23036	CYTOKINE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004896	Molecular Function	cytokine receptor activity	Interproscan
GO:0009897	Cellular Component	external side of plasma membrane	Interproscan
GO:0019221	Biological Process	cytokine-mediated signaling pathway	Interproscan
GO:0019955	Molecular Function	cytokine binding	Interproscan
GO:0043235	Cellular Component	receptor complex	Interproscan