Gene detail

Detailed information of FUN_002899-T1 in Colpophyllia natans

Genomic Location: contig_3:9551713...9556939
NR annotation: XP_020612378.1, U11/U12 small nuclear ribonucleoprotein 35 kDa protein-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_002899-T1

ATCCAAGATGGCGAACGTTTTTGAAGAGAAAAACACAGAAGTTCGCAGCTATTTTCACATGAACTAAAAGGAAGAGGTCAAACAGATATAACTAAGAACACAAGTTATTTATCGGAAAAATGGATTCAGTAAGCGATCAAGTGAGTCAGACGAATGTAGGCTACGAAATTCCGACTTGGAACAACTGGTCTCCACTGGCTAAATTCTACCATCCTCTGCAAGCTGGAAGCATTGATGGAACCGACACTGTGCCACATGATAAGGCTGTTAGTCGCGCTATGGCCGCTAAGTATAAGCCAAACAAGAGAGTATGTGGTAACCCAGACAGCACATTGTTTGTTGGAAAACTTAGCAAAGAAACTAGAGAAGCAACTGTgtacaaagcattttcaaaATGTGGAGAACTAACAAGATGCAGGCTTATCAGAGATGTTGTGACGGGGTTTTCAAAAGGCTACGCATTTGTAGAATACAGAAGTGAGAGAGATGCTAATTTAGCATGGAGGGAACTGCACAATCAAGAGATAGATGGCTGCAATGTTTTAGTAGAGTATGAAGCAGCAAGATCACTAAAAGGCTGGGTCCCAAGACGATTGGGAGGTGGATTTGGAGGTAAAAAGGAATCTGGACAACTGAGGTTTGGAGGAAGAGATCGTCCTTTCAGGAGACCAATcCCAAATCAGCAAGATGGAAACCAACAGAAATATTTGCGAGGCTCGCGAGATCACGAAGGTGCTCGCGCAGCACGTGACAATAACCGTGACACTTATCGTGAACGGAAAAGCGACAACGCGCGCGAGAATTACAGTTATCGCGAACGTGACCGTGAACGTGATCGAGATGGACCTCGTGAAAAACGTGAACGTGACAGGGAGAGCTCACGAAGCAGTGGTTACTACCGTGAACGCGAAGGCGATACTGATGGGAAAAGAAAACGTGATCGTGACAGTGAGAGATCGCGTGATCGTGGCGGAGAGCGTTACAAAGACCGTGATCGTTATGGGGATGGTGAGACATCTCGCAGTAAAGAAAGACATCGTCAtcgagagaaaagaaaagatacTAATAAGGCTACCGATCAGAGAAAAGAAACTTCTGATCACAAATATGATCAAGAAGAAGGGGAAGTGGAGTAGTCTTTTCTTATTGAATTAGGTCAAGGAAGATGTCAGCTCGATCACTAAAATTCCACGGTTGGAGTCGAATCTAGATTGAAGACCGTACAGCGCGATTTCCGTGGAAGGGCAACGCAGAACTCGATTGTCTTGATTTCCAGACGCGCTTTTCTCACAGTTTTGATTTACATCTAAACGTACGAGGATTATATTGAGAAAGAACCCGGGGAAACAAAGACGAGCAAAGTGAACAAGTATTGCAAGTGTAAGTTCTTGAACCGTTGGTAGATGCTGATGCAGTTTACAAGCCTTATCCAGGCGCGAAAAACTGACGcgcgagaaaataaaaaattgcgCGGTGAGAGCGCGCTTTTTTTCGCACTGTGTTCCAAATAACTGAACAGAGTATATTGTCATCTCAGTCTGGCCCCTTCCCCTGACCCCTTCCCCGTATAAATGGAGAGGCTTTAGTCTTTTTCGAATGAACCCTCTCTTCGAGAATTCACTGTTCCTCTGGTTTCCCTGTGATTGGCATGTTGCCAAACAACAAACATGGCGTGTCTGAAGTGCCGGCTCCTGAAGTGCGAATATGGACAGTCAGCGTTAGAAACAATATTTGCAAGTATTTGTCATTAAAGACCTAAATTGCCAGATAACACCCAAAAACAGTTACAGCCAAAAGTATGTATTGAAAAGCAATAAACCTTAATTTCTTGGGAATCAGCGAAACTTATCAAATTGAATTAGTACCCAAGTGTGGTAAATTCCTGTCTCTgatgtttgttgttgttacaaaataaaaaatgctCAGTTATAAGGTTTTGCtggaaaccttttttttttcgaaaaaataATAGGTACAACTGAAGTAAAGTATCACGATGCCGTCGACACGAG

Protein

Uniprot

Uniprot term	Description
Q4KMD3	U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Danio rerio OX=7955 GN=snrnp35 PE=2 SV=1
Q1LZH0	U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Bos taurus OX=9913 GN=SNRNP35 PE=2 SV=1
Q16560	U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP35 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR051183	Family	U1 snRNP 70 kDa and U11/U12 snRNP 35 kDa	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13952	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005689	Cellular Component	U12-type spliceosomal complex	Interproscan
GO:0017069	Molecular Function	snRNA binding	Interproscan
GO:0071011	Cellular Component	precatalytic spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13155	SNRNP35; U11/U12 small nuclear ribonucleoprotein 35 kDa protein	-	Spliceosome	ko03041	deepkoala