Detailed information of FUN_003135-T1 in Siderastrea siderea

Genomic Location: contig_2:19461336...19542078
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01465
all species →		GRIPGRIP domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR051841
all species →		FamilyMicrotubule and Golgi organization proteinInterproscan
IPR000237
all species →		DomainGRIP domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18902
all species →		NUCLEAR MITOTIC APPARATUS PROTEIN 1-RELATEDInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_003135-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K20282GCC2; GRIP and coiled-coil domain-containing protein 2-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_003135-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
44TPM > 0
7Conditions
88.5Max TPM
15.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 10 13.78 48.88
holobiont · low.pH Control.temp 20 8 13.66 71.06
holobiont · control.pH_high.temp 20 10 15.48 88.55
holobiont · control.pH Control.temp 19 10 15.19 59.79
Whole organism 4 4 27.52 32.05
unannotated 1 1 13.47 13.47
live coral tissue/skeleton 1 1 20.85 20.85

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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