Gene detail

Detailed information of FUN_003281-T1 in Dendrogyra cylindrus

Genomic Location: contig_3:3667469...3670124
NR annotation: XP_020619788.1, uncharacterized protein LOC110057535 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_003281-T1

ATGACGGACAAAGAGTACACCTTAGAAGAGCTCAACTACTTCCGTGTCTGTTATATCACTACCAACATCATCCGGGATGGTCTGCAGACAGTATTCAAACAAGAATGGAACAGAGTATACAAAGGGAGACTTGGAGAATGGAAAGACACTGCCAGAAATGGACCCTTGCTGAGTCCCACAGTTACCAGTAATGTTGACGATTTACGAGTTTTTCGCAATGCCTTTTTTGCACATCATTCTCAAGCCAGTGTTTTGGAAGCCGACTTTCAGGCCAATGTACAATTGGTCACAAATGCGTTGACGGCTCTCCACCTTGACACAAAAGAGCTGCAAAATATTAGTAACCAAACCAGCTTTCCAACCGAGGAACTTCAAAAACTTCAGAAACAAATTCGCGTCTTAGAGGAGGAGATACAAGCGAAACCCAAATCATTCATGTTTCTCCCACTTACTAGTAAACCATCCCACGAAGTCACGGAGCGCAAAGCGGAAGTTGAAGACATCATGGAACTGTTCATGGCCCTGCAAAACACCAGTGAAGATGGGTCGATTGTGACAGTTTATTTATCAGGCAACCCAGGATGTGGCAAAAGTCAGATTGCTCGGCAAGTTGGCGAAACGTTTGCCGCTGATAACCGGGACGGTTGCACATTTAATACTCGCTCGCCAGTATCGCAGGAGGACTCCAAGTTGACGAAAAATGAACAAATTTCTCATCTAAAGACCCTTGTTTCTGCCAAAGTACAAAACTATTCAACCTGGCTGGTAATATTTGACAATGTTGACGAGCTTGTAAGTTTAAGAGGCTGCTGGCCCGAGGAGGAGAGGTGGGCAGGTTGTGGGCAGGTTCTTGTCACCACTCAGGACAGCACCAATCTACCATTTGCTGACCCATTTTGTGAACGTGTTTCCCTGAGTCAGGGAATGCAAACCAAGGACGCCTTGAGTCTTCTTAGAAGTATCAGCCAGTTTTCAAGCAATGACGAGGAAGAACATTTAGTATTGAATGCCTTAGATTACCAACCATTGGCCATTGCTTGTGCAGCCCTCTATGTTCACTATTTGCATGATGAAGTGGGAACACGCATGGCTCCTGGCAGCTTCACCTGGGAGAGCTACCTCAAGAAACTTGAAACAGGGAAGCGGAAATCAACAGAAAAGGTTTACGAAAGGACGAGCAAGAGCTACCCACTGTCGATGACTTCAGCTGTCTCACTGGCATTACAAAAACTAGTCCAGCATGAAGTTTTACGACATGTGGTTCCGTTCCTAGCTTTGTCTGCCCCGGCACCGATTGGCCTTGATATCGTTGTCAGTTTTGTAGCAAAACTGGATCCAGATCTCGATGAAGACATGGCCGCTGCTGAAATTTCCAACTGTTCTTTACTGATGCCGCTTTGCCTAGACGATAGTCGAAGAACTCTGATAAAGGTGCACCGGGTAGtacacgatgtctttcaaagcTTCTTTCTTAACCatttaaatgaagatgaagtCTTAGAGCTTACTTGGTCATACGTCGAGACATTATCTATATTTGCTGACCACGATCTGCATCAGTTCGATCTGAAGTTTCATCTCTCTTCCAAAATGATGGCTCCCCATTTAAAGGTGTTCAGTGGTCATTTGGAGAAATCAAACTGGGCCTCAGTTATACCAATTGACAAGAAAAGTCTTAACAAAAAGACATTTCTTAATTTCGGCGACATATGCAGCACGCATGACTATCTTCCCGCAGCCAAAACATACTTCGAAAATGCTTTGCGGATCGCCAATGGTGAAGGCGAAGACAGCAACCTGGACAAAATAAATCTTATTGCAACGACCCTGAACAATTTAGGTGTTGTCTACTGGAGACTAGGACAGTTTAGACAGGCCGAAGATCACCACCAGCGTGCCCTTGTTCTACTTGAAGGCCTAAATCCAAGCAATCCTACTCCAGAGATTGCGGATTCTTTGAACAAACTGGGAAACCTTTGTTTCAGTCTGAGCCAgtttgaaagagcaagagattacTATTTCAGGTCTCTAAGAATGAGAGAAGAGCTTTTTGGTAAAGAGGATGCCACTGTTGCTGCTTCTCTTAATAACCTTGGATCTGTTCACAGTGCATTGGGTGACCACCAAACTGCAGAAAGCTATTACCAAAGATCACTTTACTTGGCAGAAAAGACACATGGCGAAGTCCATCCCCATGTCGCTGACTGTTTGTGCAATCTTGGAATTGTGTATAGCGAATTGGGTTCAACTAAAAAGGCGATTCAGTACCACAAGAAGGCGCTTGAAATGAGAAAGGCACTTTACTTCCCGGGCCATTTCTTGATCTCAGAGTCTTACAACAACCTTGGCCTGATGTACAAGGGAGCGGGTCAACTTGAACAAGCCCTGGGCTGTTACGAATCTGCACTGCGCATCAGAGAAAAAGCCTTAGACGAATAA

Transcript

FUN_003281-T1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13374	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR002016	Domain	Haem peroxidase	Interproscan
IPR051787	Family	Effector and Ciliary Development-Associated Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45641	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004601	Molecular Function	peroxidase activity	Interproscan
GO:0006979	Biological Process	response to oxidative stress	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan