Detailed information of FUN_003302-T1 in Siderastrea siderea

Genomic Location: contig_2:20307967...20322430
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_003302-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR027359
all species →		Homologous_superfamilyVoltage-dependent channel domain superfamilyInterproscan
IPR031846
all species →		FamilyVoltage-gated hydrogen channel 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46480
all species →		F20B24.22Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0005887
all species →		Cellular Componentplasma membraneInterproscan
GO:0030171
all species →		Molecular Functionvoltage-gated proton channel activityInterproscan
GO:1902600
all species →		Biological Processproton transmembrane transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_003302-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_003302-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
33TPM > 0
7Conditions
570.1Max TPM
69.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 5 69.01 570.06
holobiont · low.pH Control.temp 20 6 56.09 428.04
holobiont · control.pH_high.temp 20 10 116.90 464.32
holobiont · control.pH Control.temp 19 6 55.43 342.15
Whole organism 4 4 2.07 3.69
unannotated 1 1 1.18 1.18
live coral tissue/skeleton 1 1 3.40 3.40

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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