Gene detail

Detailed information of FUN_003349-T1 in Siderastrea siderea

Genomic Location: contig_2:21266157...21296048
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_003349-T1

ATGGGGAAGGATACGAAAGAAAGCAAAGAAATGGAGAAAGTTGAAGTGGAAATTGCCGTCCGATCGGATGTCCCTGAAGGCGGCTGGGGCTGGCTGGTTTGTCTTGCGGGATTCATAGCTCAGTTTGTTGTGCTGGGACTGCAAAATAACACTGGCATCCTTTACAAGGCTCTGTTGACGGAATTCAAGACAAGCAAAGGAGAAACCGCTTGGGTCATTTCAATCGGCCTCGGCATGATGTTCCTGTTCGCACCGGTGACGTCAGCCTTGTGTGAACGCTTTGGCTGTCGGGTAGTGGCGTTTCTTGGCGGTTTGCTAGGGGTTCTGGGATTTGTCTTATCATCTTTTGTGGCAGATGTTCATCGTCTTTACCTTACGTTTGGAGTTCTGTGGGGGATTGGGGCGAGCATGAGTTACTTGCCAACTCTTCGGGCGCTTCCTTATTGGTTTTCAAGGCGCATCAGTCTTGCAAACGGTATCGTGACGGCCGGGAGTGGCGTGGGCACTATCGCCGTGGGTCCCCTCATGCAACtagttgttaacaaactcggcTGGGCCAACTCAACACGGGTGCTCGCTGGAGTGCTGTGTTTATGCACCATCGGCTCCTTACTTTATAGAGTCCCAAGACAAACGGGCAAGGAGGTGGAAAAGGCTGAAGAAGCCGAGAAGCCGAAACGGCCGCCGATGTTCGACTTTACCATTTTCAAGAACAAAGCGTTTTTGGTTTGGTGTATTGCATTGAGTGCGTTTATGATGGGATATTTCGTCCCTTTTGTGCATTTGCCAGCCTACGCCGAAGAATGTGGCATACCAAACTCACAGTCCTCCACGCTTATCGGCTTTATGTCGGTGGGATCGACTTTTGGCCGGCTGTTCTTCGGCAAACTTGGAGACCACCCGAGGGTCAACCGACTGTACTGTTTCCAGATAGCTATGTTAGTTATCGGAGTGGCTGACACTCTGAGCACATTGACGAAGAGCTACGCTGGCCTCGTTGTTTACATGGTGGTGTTCGGTGTGTTTGATGGATGTTTTGTGGTTTTTTTGGCCGTTCTCTGTGCAGATATCGTTGGCGTGAACAAAGTCGCTGCTGGTATTGGTGTCCAGTTCTTTTTTATGGCTATCACGTCTATTGCTGGACCGCCCCTTGCAGGTATCATATATGATCTTGCCCAGTCATACCAAATCGCCTTCTACGTGGCCGGCGCATGCTCCACCATTGCTACGTGCTTGCTTTTCCTCGTACCAGCCCTCATGCCTCAGGAAACGTGCGAGGACGGACATGGCCGCACGGAAACTGTGTACTCAAAAGACAGTGAAAAGCCTTTAATTCGTATTTCCTCACCTGATTCGTCTAACCCAACAACGTCGACTAAAGCAAGCCTCGGCTCGTGTCAAAAACTGAACAGTACTTTACGACTCGCCCCGAGCCAATCGTATCTCGATCGGTATTGGGACATGCCGAAGAGAACAAGCATGCGAGCTAGCATGGCGAGCCTGTTGTCATTTGGGCCAGTGCAACCAGCGAGAGAGGTTCTTGTTGTAGTGGAGAAAGTATCGCAGGATGATTTGATTGAGAACTTGATTTGTAAAGGAGAAGAGTATTCAAGGAAAGGGTTTATCCTACCTCTGAGTCACTGCTTCGTCTCGCATGTCATAGATGTCAACACACTGCCAATCGTTAGAATGATATCTCCTACGGCTTTGAATATGTTCGCGCCTTCCCCCGCCAGTTCTGAGGACATTGGTTCGTCGTCTTTGTTTCCATCTCTCGATACAGGCGGGCTTTCAACATCTGGTATGACCTCGGAAGAAGTTGAGGAGCAGCCTGAAGGCGAGGAGTCTGAATATGTGGATGCTTCAGAAGCTACCAAAGAAGGGTTAATAGAAAAGACTCTTTTGGATGCATCAGAGCGCATTTTACTCCAAAACGGAGGGAAATTACATGTTAAAGATATTGCTGATGGCATTGTTGCAAATGGTCTAGTCCCACCTAGATCAAAGACTTTGAATGGTTTGGAAGCAGTTCTGTATCGTGAGACTTTCCGTGAAGGATCCAGATTTAAAAGAATTGATAACCGATTTGGATGGTTTGCTTTAATGGAAGTTGAAGTAgaagatgatgaagatgatgatgactcCATGGATAACGAGACAACTGAAGGAGATGACCAGTCCGTAAGAACCACTGCATCAAAACGCCCCATTGACTACAAAAGAAAATACCTTGGAATCAAAAGAATCATCAAACAACTGGTGTTTGAAAATGGAGCCCTAAGTGATGAAATAACACGAGCTGAGTCAAAGCTTCAGAGGGCAAAAGCTGAGAGAAAGTTCCTTCTCAAGAGATTGTTCCAGTACCAAGCAGCTTCCGAGGCTGGGGTGTTTCAGGCACCCCCGTATGCCCCCTTCCCTCCAGACATTCTACCACCTGTTATGCTCCCTCCTTATGCAATGGACAAGGTCAAGGCACCAAAGGTCAAGGCTAAGAGAGTGACTGCAAAACCAAAGACTGAGAAGGAGCCCAAGTCATCAGTTGGAACAGTGGCAAAAGCTCAGAGGGCTGCCTCAGACACTACAGGAGCCAAAGATGGGGTAAAAGAGAAGCcagtaaaacaagaaaagaagaaacctgcaAAACCCAAGAAACCAAAACCACAACCTGAAAACACTCAGTCTGCTGCCACCACGGCAACACCAAAAGcTGCTGCAGGGGCTGCTCAAGGTACTCCAACAGTGAAACCCAAGAGAAAGAAGCCAGGAACAGCTGTGAAGAGAAAGGTTCAGCCTATTGCAGTGGATGCAAAAGGTAAACCCATCTTTCCAATTGCTCTGGGAGGTCTTACAGTTCACAGCCTCGGTGAGATTGTTCATGACCGGCCCGGTTTCCATTCGGAGCGTTATATTTGGCCCGTGGGATACTGTAGCTCAAGAACGTACCCTAGCATGAAGGATCCAGAGATGAAATGCCTTTACACTTGCAAGATTCTAGACGGAGGATTCGGCCCGCAGTTTGAGATGTGTCCAGAAGATGACCCTGATCATCCAATCATAGCTTCGTCCGCTACTGCGTGTCACTGTGTGGTCCTTAAGGCCGTCAATAAGGCCAGGGGTAGGGACGCGTCCAACACAGGTTCGGGCCCAGAGTTTTTCGGTTTCTCCCATCCAACCATTCAGTACTTaatacaaagcttacctggggCCCGAAAGTGTACCAAGTACCAGTGGGTCAAGTTTGAATTGCCAAAACCACAGAGTAAGCAAGGTAAGCACTCCAGTTCATCCACAGCGGATCCTTCAGGGGTCGTTCAGGGAATACCCAGCGTTGTAGATGAAGATTCAATCGCCAGCGTAGATGAAGAAGACCACATGACAGAAGCAATGACAGAATCAATGCCTCCATTTCATTCCTCGGCTGCGATGGATCATGATGAAGAAATGTTTAAAGGTGAATAA

Transcript

FUN_003349-T1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07690 all species →	MFS_1	Major Facilitator Superfamily	Family	Interproscan
PF05965 all species →	FYRC	F/Y rich C-terminus	Family	Interproscan
PF05066 all species →	HARE-HTH	HB1, ASXL, restriction endonuclease HTH domain	Family	Interproscan
PF05964 all species →	FYRN	F/Y-rich N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003888 all species →	Conserved_site	FY-rich, N-terminal	Interproscan
IPR020846 all species →	Domain	Major facilitator superfamily domain	Interproscan
IPR011701 all species →	Family	Major facilitator superfamily	Interproscan
IPR003889 all species →	Conserved_site	FY-rich, C-terminal	Interproscan
IPR007759 all species →	Domain	ASXL, HARE-HTH domain	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR050327 all species →	Family	Proton-linked Monocarboxylate Transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11360 all species →	MONOCARBOXYLATE TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008028 all species →	Molecular Function	monocarboxylic acid transmembrane transporter activity	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_003349-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.