Gene detail

Detailed information of FUN_003531-T1 in Siderastrea siderea

Genomic Location: contig_3:1501541...1515328
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_003531-T1

ATGACCAGCGAGAAGTCTGATGTAATCTACCCGAGTCCCAAAAAGACTAAATTCGAACAACTTCGCGCAGACCACGAATTATTTCTTCAAGCTTTCGAAAAACCAACGCAAATCTACCGATTTCTTCGAACCAGAAATGCAGTCGCCCCCGTATTTCTTCATCGGACTCTCTCGTACATGAAGCATCGGCGAACTCCCAGACCGGCGAAAAAACGCCAAGACTTCAAGGTGGACAACTTGTTGGAAAAAGTTGAGGGTGACAGTAGCAAGTCAGAGTCAACAGACCCTCTTGAAAACAGTGGATACATGAATCTTACATTCACTGGTTTTTTCCACGGATCTGGTCCAGTGAACGGTGACTTGGGTAACAGCAAAAAGAGCACATTGTTAGTTGAGGATTTTATCAAAGTTGACGTGGTCCTGGTAAAAGTCTGTCACAAACGAAGGAAGGAAACTGACCCTCAAGTCCTTTCGGTACCACTCGGCCAAGGCTCCGCTCCTTTTAACCCTCGGTCTCAGTTGTTACCAGTCTCCCCCGCGGCCAGTGTTTCTGTGGCCAATGGGAAGCTCAAGAGCGGCAAGACGAGTCGAACATGTATTCTGAGCCTGCAGGTCAGCGTCCCTTATCGTGTCAATACTAAAGGAACCAAGAAAAGGGGAAGGAAGAAGAAGACGGAAGAGCCACAGTCAGATAAAATCGAGGAAGAGAATGGTGTCACCGACATAGCTACCCCAGAGGAGCCCCCCATAAAACGACGCAGAATGGCGCGAGGCTATCCTGAGGGGGAGTCGGACGATGGCAGTGCGTCGGAAACCTCGTCGACGTGTGAGACTGAGCACAAGGTGTATACCGCTGAATTGATCGTGTTTGATAACAACAAGCATTGTCTGTTGACTGACGGTGATTATGAGTTGGCACTCaacgagaaaaacaagaaacctGGAAGAAAGAAGGGCATACTGTCTAACAGAACCTCATGGGAGAACGTGTTTGAAGGACAGATGGGTCCTTTCGAGGTGTTTGCATACGGCCCCACTCTAAAGTTCAAACTTTCGTGGTCGGGCACTCCAGTTGTGCGTCCCCCAAGGCGCCCTACGTCACTTCCGCTCCGAGCACCGCTGACTACTCAAAACGCAGCTTCCACAGATGACGTGCGTACGCCCGCCGAGGAGGCTGATGGGAataaagaaaatcgcaaaaagcGGATATTTTACCAGTTTATTTATAACAACAATACTCGACAACAGACGGAGGCAAGAGAGGACTTGTACTGCCCCTGGTGTTCTATCGACTGCCGTGAGCTCTACAGTTTGCTTAAACATCTCAAGCTTTGTCACAGACGCTTCATCTTCACCTACGCTCCTCACAGTAAGGGAGAGAGAATAGACGTTAGTGTGAATGAAAATTATGATGGATCCTACGACGGCAAACCCGAAGACATGAACGATCTGCTCGGCTACGCTCTGAGTCGGGAGGGACCGTGCAGAAGATTGCCAGCTACACATGTCATGGTCTGGAGACCCCAGCGTCGAAGAGAGAGTCTGTCCGAATTCCTGGAACCGGATGATGGCGATTTGGATGGCAATAGACCTTTCTACAATGGACACCACAGAATGTACTTTCATTCGGAGACAACTCTTCCTATCAGAACCGCTGAGAAGGATCAGGACAGTGAAGATGAGACTATCCCGGAATGGATGAGAGTCAAGACTATTCAGTTGATTGACGAGTTTTCGGACGTGAATGATGGTGAAAAAGAATTAATGAAGCTTTGGAATCTTCACCTTATGAAGAACAGttacatCGCCGACTTTCAAGTTACCGAAGCGTGCCGTTCGTTTATCGATAAATACAGCCAAGAACTCAAAGACAAAAACTTGCAGAGGAATTTTCTGCTTCACCTGGTGAATCTTCATGACTTTAATTTGATAACGTCTAGTCAGATTGAGGAAATCACCGGCAAACTGAGAGAATACTGGAAAGATTTGGGTCCAGTGGCCTGTTGA

Transcript

FUN_003531-T1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09733 all species →	VEFS-Box	VEFS-Box of polycomb protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019135 all species →	Domain	Polycomb protein, VEFS-Box	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22597 all species →	POLYCOMB GROUP PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016586 all species →	Cellular Component	RSC-type complex	Interproscan
GO:0031490 all species →	Molecular Function	chromatin DNA binding	Interproscan
GO:0035098 all species →	Cellular Component	ESC/E(Z) complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11463	SUZ12; polycomb protein SUZ12	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.