Gene detail

Detailed information of FUN_003584-T1 in Dendrogyra cylindrus

Genomic Location: contig_3:7664279...7701197
NR annotation: XP_020611387.1, uncharacterized protein LOC110049886 isoform X1 [Orbicella faveolata]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_003584-T1

ATGGCGTGCGGGCAAACGTCGGCGAATGCAGCAAGTGAGCAAAAAGATCCGGAGCGAATCAATGTTATGTTTCTCTGCGATGAGTGGAAGTCTTCAAAGGGTGGTCTGTCCACTTTCAACAGAGAATTTGCTGTTAATTTGGCAAAAACAACGAGTGACAGCGTCAAAGTTCACTGCTACGTCTCGCAAAGCGATGAGTTGTGTAGAGAAGATGCCAGACAACATGGAGTGAATTTAATCACGGCTCGAAGTATTCCTGGATCCACTGACCCACTGGATTGGTTGAAAATTCCACCACCGGAACTGTCAAATCCTGACATTGTGATAGGCCATGGAAGAAAATTCGGTACTCCTGCATATTGCATTGTTCAAACTGCAAAGTGCAAGTGGGTGCATTTTGTTCATGTGTTTTGTGAAGACCTTGGAAAATACAAAGTAACACAAAGCCCTTCACTTGATACAATCGaagaaaatgagaagaaacacaAAAGTGAAATTGAGCTGTGCAAAGCAGCAGATTTGGTTGTTGCTGTGGGTTCACGACTTCAACAGAAGTATAACAGAAGTCTTCCAGATGTTAAGGTAGAGATCATCACTCCTGGAATTTTAGAAAAGTTTTCCAATGAATCACCACAGCTGGTCAAAGACAGATCAAAGAAGTTCAGTGTTTTTATGTTTGGTCGGGCAAGCTTTGAAGATCTTACCCTGAAGGGTTATGATATTATTGCAAATGCCATTGGATCCCTTGATCCCAAGATGTTTGAGGTGACATTTGTTGGTTCATCTCCTGGAGAACACAGAAAGATTGAGCAATGGTTTCTTGGCAATGCCTGCATAAACCGCAACCAATTAACAATTCGTAGCTATTGCAATGAGCAAGAACTTAAGATGATGTTTCATGAGTCAGACATGGTCGCACTTCCTTCACGGACAGAAGGGTTTGGGTTGGTTGCACTGGAAGCCATTTCTGCTGGTGTACCTGTTCTTGTTGCTGGCGAATCGGGAATAGCCGAGGCTTTGCAAGAAGTAAAGGGCGGGATGTCTGTTATCGTTGAATCGGATGATGCTGGGGAGTGGGCCAAAAGAATCGAGCAGCTGTCCAACCAAAGTCCAGAAGAGCGACAAAACAGTGCCAAGCTGCTCAAAGATAACTACAGTAAAACTTACTCTTGGAGCAATGAATGTGAGAGATTTAAAAGGATAATTCAGGAGTTAGTGAAAAGCTTAAATGCCttgaaaataaagattgatgTGGAAACCATGAAAGCTGCAGAACATAACACACAAAATAGAACTCCTATTTCGGCAACAGAATCCGGGGGATGTCCAGAACTTAGGCACCAGGAGAGGTCCGGAGTGCCTTTGTCATCCGGACATGCCCAGCCTTCATGTGCAGGTGAAGCTGAAGCTGTCCAAGCACACAATCGCATTCCAACAGAAGAAGAACTCTTCCGTTTAATTGCTTCAAACTACCTGCAGACTACACCACCAAGGTGCAAGGATGAACATGACGCGTTTTTAGCATACCTGAAAGAGATGAGAGTTGTTCTGGCAGGTGTCGATATAGGAAGTTTGGTGATATCTGTGAAGTGTGATTCACTTGAGGTCCTGGGGGAGCTGTGGGAAGGTTATTTATCTGGCCGCCTTGGTGAAGTGGTTCAAAGATGTTTTGTGACAGAAGAGATCTTGATGGAATTGAGCCTGTCAAAGTTGAAACTTAAAACAACAATATTGGAAGAGGACTATAAAGCATACAAAGCGTACTTTGAGAAAGAATCAGCGAGAGGTCAATGTGAAAGTGAAGTTGGACAAGAAGAAATGCCAGCCCATTCCTCTGGTGAAAAGATTTCAACAGAGACAGATGATCAAGAGGATTTTCAAACAGAAACAGTTTATGGAAAACTGAAAACTAGAACAGATAAAGATGATTTTGGCTTAGATGATGAAGgcatttcatcttcatccaAACTCCTACAAATCATACATATGGAAACATGGAGGTCACACGGGATGCCTCAGATAGCTAGATTGGGATTAGATAGATTTGATGTCAGTTCACCTGAGGGCCTACAAGACTATGTAGCCTTCTTAACTGACAAGATGTACAGTTCAGGTCATCCAAGCATCAGTGGCAGTGACCCAATTAAGGAACGTTTCTCCTGGAAACGTTATGGATCAATGGAAGCAGGTCAATGTGAAAGTGAAGTTGGACAAGAAGAAATGCCAGCCCATTCCTCTGGTGAAAAGATTTCAACAGAGACAGATGATCAAGAGGATTTTCAAACAGAAACAGTTTATGGAAAACTGAAAACTAGAACAGATAAAGATGATTTTGGCTTAGATGATGAAGgcatttcatcttcatccaAACTCCTACAAATCATACATATGGAAACATGGAGGTCACACGGGATGCCTCAGATAGCTAGATTGGGATTAGATAGATTTGATGTCAGTTCACCTGAGGGCCTACAAGACTATGTAGCCTTCTTAACTGACAAGATGTACAGTTCAGGTCATCCAAGCATCAGTGGCAGTGACCCAATTAAGGAACGTTTCTCCTGGAAACGTTATGGATCAATGGAAGCAGGCCAAGAGTTTTCCTTCGTGAAGAAATTAACAGAAACTATGGATGATGACAAATTGAAACAATTTATCTCCATTCATGTCAAGGAAGGTGCATGGCAAGTAGTGGCGCTGGTTTTGAAAGAGCTGCTTCATGGTCAAAGATTGCTATCAAGCATAATCTGGGAGTCTTTTAAGGATGCAGGAAGTGATGTTGGCAAGACAGGAACATTGTACTGGTGGCCGGTTGAAGAGGACCGAGATTTAATCACATTGTGTAAAGTACTGACTGAGAGTGATTGTGGAGTAGACAGCGTAAGGCTTTACAAAAGGCTAATAACAGATAAAGGAGTAAAGCACTTGGCTGATGCACTCACACATAGTGACTGTAAGTTAAACAGGTTAACCCTCAGTGGGTATAATAAAATAACAGATAAAGGAGTAAAGCACTTGGCTGAAGCACTTACCCATAATAACTGTAAGTTAAACAGCCTAAACCTCAGTTGCAATGAAAAAATAACAGATAGAGGAGTAAAGCACTTGGCTGAAGCACTTACCCATAATAACTGTAAGTTAAACAGCCTAAACCTCAGTTGCAATGAAAAAATAACAGATAAAGGAGTAAAGCACTTAGCTGAAGCACTTACCCATAACAACTGTAAGTTAAACAGCCTAAACCTCAGTGACAATACCAAAATAACAGATGAAGGAGTAAAGCACTTGGCTGAAGCAATCACGCATAATAACAGTAACTTAAACAGCATAGACCTCAATTGGAATgacaaaataacagatgaagGAGTAAAGCACTTGGCTGAAGCACTCACGCAGAGTGACTGTAAGTTAAACAGCCTAGCTCTACGTGGGAACGAGAAAATAACAGATAAAGGAGTAAAGCTCTTGGCTGAAGCACTTACGCATAATAACTGTAAGTTAAACAGCCTAGACCTCAGTGTGAATTCCAAAATAACAGATGAAGGAGTAAAGCACTTGGCTAAAGCACTTACGCATAGCAACTGTAAGTTAAACAGCCTTAACCTCAgtttcaataaaaaaataacagatAAAGGAGCAAAGCACTTGGCTCACGCACTTACGCATAGCAACTGTACGTTAAAAACCTAG

Transcript

FUN_003584-T1

AAAAGCTCCTGGGAGCGGCCACTTCCGCAATCATACCGATGTGCAGCCTAAACCGAAGAGTTTTATTGGTCTTATTATTGTTGACTAACATGGAGTCTGATGTACATGTAGGTCGAGAATTTAAGAGGAAGCTGCTCTTCGTCAAAGTATTATTCATTAACTGGTGAAAGAAAGCTTACAATTTAGTGCGCAGAATGGCGTGCGGGCAAACGTCGGCGAATGCAGCAAGTGAGCAAAAAGATCCGGAGCGAATCAATGTTATGTTTCTCTGCGATGAGTGGAAGTCTTCAAAGGGTGGTCTGTCCACTTTCAACAGAGAATTTGCTGTTAATTTGGCAAAAACAACGAGTGACAGCGTCAAAGTTCACTGCTACGTCTCGCAAAGCGATGAGTTGTGTAGAGAAGATGCCAGACAACATGGAGTGAATTTAATCACGGCTCGAAGTATTCCTGGATCCACTGACCCACTGGATTGGTTGAAAATTCCACCACCGGAACTGTCAAATCCTGACATTGTGATAGGCCATGGAAGAAAATTCGGTACTCCTGCATATTGCATTGTTCAAACTGCAAAGTGCAAGTGGGTGCATTTTGTTCATGTGTTTTGTGAAGACCTTGGAAAATACAAAGTAACACAAAGCCCTTCACTTGATACAATCGaagaaaatgagaagaaacacaAAAGTGAAATTGAGCTGTGCAAAGCAGCAGATTTGGTTGTTGCTGTGGGTTCACGACTTCAACAGAAGTATAACAGAAGTCTTCCAGATGTTAAGGTAGAGATCATCACTCCTGGAATTTTAGAAAAGTTTTCCAATGAATCACCACAGCTGGTCAAAGACAGATCAAAGAAGTTCAGTGTTTTTATGTTTGGTCGGGCAAGCTTTGAAGATCTTACCCTGAAGGGTTATGATATTATTGCAAATGCCATTGGATCCCTTGATCCCAAGATGTTTGAGGTGACATTTGTTGGTTCATCTCCTGGAGAACACAGAAAGATTGAGCAATGGTTTCTTGGCAATGCCTGCATAAACCGCAACCAATTAACAATTCGTAGCTATTGCAATGAGCAAGAACTTAAGATGATGTTTCATGAGTCAGACATGGTCGCACTTCCTTCACGGACAGAAGGGTTTGGGTTGGTTGCACTGGAAGCCATTTCTGCTGGTGTACCTGTTCTTGTTGCTGGCGAATCGGGAATAGCCGAGGCTTTGCAAGAAGTAAAGGGCGGGATGTCTGTTATCGTTGAATCGGATGATGCTGGGGAGTGGGCCAAAAGAATCGAGCAGCTGTCCAACCAAAGTCCAGAAGAGCGACAAAACAGTGCCAAGCTGCTCAAAGATAACTACAGTAAAACTTACTCTTGGAGCAATGAATGTGAGAGATTTAAAAGGATAATTCAGGAGTTAGTGAAAAGCTTAAATGCCttgaaaataaagattgatgTGGAAACCATGAAAGCTGCAGAACATAACACACAAAATAGAACTCCTATTTCGGCAACAGAATCCGGGGGATGTCCAGAACTTAGGCACCAGGAGAGGTCCGGAGTGCCTTTGTCATCCGGACATGCCCAGCCTTCATGTGCAGGTGAAGCTGAAGCTGTCCAAGCACACAATCGCATTCCAACAGAAGAAGAACTCTTCCGTTTAATTGCTTCAAACTACCTGCAGACTACACCACCAAGGTGCAAGGATGAACATGACGCGTTTTTAGCATACCTGAAAGAGATGAGAGTTGTTCTGGCAGGTGTCGATATAGGAAGTTTGGTGATATCTGTGAAGTGTGATTCACTTGAGGTCCTGGGGGAGCTGTGGGAAGGTTATTTATCTGGCCGCCTTGGTGAAGTGGTTCAAAGATGTTTTGTGACAGAAGAGATCTTGATGGAATTGAGCCTGTCAAAGTTGAAACTTAAAACAACAATATTGGAAGAGGACTATAAAGCATACAAAGCGTACTTTGAGAAAGAATCAGCGAGAGGTCAATGTGAAAGTGAAGTTGGACAAGAAGAAATGCCAGCCCATTCCTCTGGTGAAAAGATTTCAACAGAGACAGATGATCAAGAGGATTTTCAAACAGAAACAGTTTATGGAAAACTGAAAACTAGAACAGATAAAGATGATTTTGGCTTAGATGATGAAGgcatttcatcttcatccaAACTCCTACAAATCATACATATGGAAACATGGAGGTCACACGGGATGCCTCAGATAGCTAGATTGGGATTAGATAGATTTGATGTCAGTTCACCTGAGGGCCTACAAGACTATGTAGCCTTCTTAACTGACAAGATGTACAGTTCAGGTCATCCAAGCATCAGTGGCAGTGACCCAATTAAGGAACGTTTCTCCTGGAAACGTTATGGATCAATGGAAGCAGGTCAATGTGAAAGTGAAGTTGGACAAGAAGAAATGCCAGCCCATTCCTCTGGTGAAAAGATTTCAACAGAGACAGATGATCAAGAGGATTTTCAAACAGAAACAGTTTATGGAAAACTGAAAACTAGAACAGATAAAGATGATTTTGGCTTAGATGATGAAGgcatttcatcttcatccaAACTCCTACAAATCATACATATGGAAACATGGAGGTCACACGGGATGCCTCAGATAGCTAGATTGGGATTAGATAGATTTGATGTCAGTTCACCTGAGGGCCTACAAGACTATGTAGCCTTCTTAACTGACAAGATGTACAGTTCAGGTCATCCAAGCATCAGTGGCAGTGACCCAATTAAGGAACGTTTCTCCTGGAAACGTTATGGATCAATGGAAGCAGGCCAAGAGTTTTCCTTCGTGAAGAAATTAACAGAAACTATGGATGATGACAAATTGAAACAATTTATCTCCATTCATGTCAAGGAAGGTGCATGGCAAGTAGTGGCGCTGGTTTTGAAAGAGCTGCTTCATGGTCAAAGATTGCTATCAAGCATAATCTGGGAGTCTTTTAAGGATGCAGGAAGTGATGTTGGCAAGACAGGAACATTGTACTGGTGGCCGGTTGAAGAGGACCGAGATTTAATCACATTGTGTAAAGTACTGACTGAGAGTGATTGTGGAGTAGACAGCGTAAGGCTTTACAAAAGGCTAATAACAGATAAAGGAGTAAAGCACTTGGCTGATGCACTCACACATAGTGACTGTAAGTTAAACAGGTTAACCCTCAGTGGGTATAATAAAATAACAGATAAAGGAGTAAAGCACTTGGCTGAAGCACTTACCCATAATAACTGTAAGTTAAACAGCCTAAACCTCAGTTGCAATGAAAAAATAACAGATAGAGGAGTAAAGCACTTGGCTGAAGCACTTACCCATAATAACTGTAAGTTAAACAGCCTAAACCTCAGTTGCAATGAAAAAATAACAGATAAAGGAGTAAAGCACTTAGCTGAAGCACTTACCCATAACAACTGTAAGTTAAACAGCCTAAACCTCAGTGACAATACCAAAATAACAGATGAAGGAGTAAAGCACTTGGCTGAAGCAATCACGCATAATAACAGTAACTTAAACAGCATAGACCTCAATTGGAATgacaaaataacagatgaagGAGTAAAGCACTTGGCTGAAGCACTCACGCAGAGTGACTGTAAGTTAAACAGCCTAGCTCTACGTGGGAACGAGAAAATAACAGATAAAGGAGTAAAGCTCTTGGCTGAAGCACTTACGCATAATAACTGTAAGTTAAACAGCCTAGACCTCAGTGTGAATTCCAAAATAACAGATGAAGGAGTAAAGCACTTGGCTAAAGCACTTACGCATAGCAACTGTAAGTTAAACAGCCTTAACCTCAgtttcaataaaaaaataacagatAAAGGAGCAAAGCACTTGGCTCACGCACTTACGCATAGCAACTGTACGTTAAAAACCTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1R8N8	D-inositol 3-phosphate glycosyltransferase OS=Paenarthrobacter aurescens (strain TC1) OX=290340 GN=mshA PE=3 SV=1
Q59002	Uncharacterized glycosyltransferase MJ1607 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1607 PE=3 SV=1
A0JZ09	D-inositol 3-phosphate glycosyltransferase OS=Arthrobacter sp. (strain FB24) OX=290399 GN=mshA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000025 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20706 all species →	GT4-conflict	Family 4 Glycosyltransferase in conflict systems	Family	Interproscan
PF20694 all species →	TRADD-like_N	TRADD-like N-terminal domain	Domain	Interproscan
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR027038 all species →	Family	Ran GTPase-activating protein	Interproscan
IPR006553 all species →	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR049341 all species →	Domain	TRADD-like N-terminal domain	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24113 all species →	RAN GTPASE-ACTIVATING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_003584-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.