Detailed information of FUN_003611-T1 in Siderastrea siderea

Genomic Location: contig_3:2665969...2673583
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21007
all species →		FBF1Fas-binding factor 1Coiled-coilInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR049390
all species →		DomainFas-binding factor 1, C-terminalInterproscan
IPR033561
all species →		FamilyFas-binding factor 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR33689
all species →		FAS-BINDING FACTOR 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005814
all species →		Cellular ComponentcentrioleInterproscan
GO:0036064
all species →		Cellular Componentciliary basal bodyInterproscan
GO:0060271
all species →		Biological Processcilium assemblyInterproscan
GO:0090162
all species →		Biological Processestablishment of epithelial cell polarityInterproscan
GO:0097539
all species →		Cellular Componentciliary transition fiberInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_003611-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_003611-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
37.6Max TPM
1.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 21.85 37.62
unannotated 1 1 7.16 7.16
live coral tissue/skeleton 1 1 6.66 6.66

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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