Gene detail

Detailed information of FUN_003746-T1 in Dendrogyra cylindrus

Genomic Location: contig_3:9718857...9723620
NR annotation: KAJ7340455.1, hypothetical protein OS493_003203 [Desmophyllum pertusum]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q90YU6	Large ribosomal subunit protein eL22 OS=Ictalurus punctatus OX=7998 GN=rpl22 PE=2 SV=3
P50886	Large ribosomal subunit protein eL22 OS=Xenopus laevis OX=8355 GN=rpl22 PE=1 SV=2
Q28IL6	Large ribosomal subunit protein eL22 OS=Xenopus tropicalis OX=8364 GN=rpl22 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002009 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00646 all species →	F-box	F-box domain	Domain	Interproscan
PF01776 all species →	Ribosomal_L22e	Ribosomal L22e protein family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR002671 all species →	Family	Large ribosomal subunit protein eL22	Interproscan
IPR038526 all species →	Homologous_superfamily	Large ribosomal subunit protein eL22 superfamily	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10064 all species →	60S RIBOSOMAL PROTEIN L22	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0002181 all species →	Biological Process	cytoplasmic translation	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_003746-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.