Detailed information of FUN_003767-T1 in Siderastrea siderea

Genomic Location: contig_3:4650963...4652199
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00501
all species →		AMP-bindingAMP-binding enzymeFamilyInterproscan
PF13193
all species →		AMP-binding_CAMP-binding enzyme C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000873
all species →		DomainAMP-dependent synthetase/ligase domainInterproscan
IPR042099
all species →		Homologous_superfamilyANL, N-terminal domainInterproscan
IPR025110
all species →		DomainAMP-binding enzyme, C-terminal domainInterproscan
IPR020845
all species →		Conserved_siteAMP-binding, conserved siteInterproscan
IPR045851
all species →		Homologous_superfamilyAMP-binding enzyme, C-terminal domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR42814
all species →		AMP-BINDING DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_003767-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K14760AAE14; o-succinylbenzoate---CoA ligaseEC:6.2.1.26
Ubiquinone and other terpenoid-quinone biosynthesisko00130deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_003767-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
3TPM > 0
7Conditions
1.8Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 1 0.45 1.79
unannotated 1 1 0.31 0.31
live coral tissue/skeleton 1 1 1.12 1.12

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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