Gene detail

Detailed information of FUN_003834-T1 in Colpophyllia natans

Genomic Location: contig_4:9243766...9307934
NR annotation: XP_022786561.1, cartilage intermediate layer protein 1-like [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
D3YXG0	Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1
Q96RW7	Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2
C0HL12	Adhesion G protein-coupled receptor B1 OS=Rattus norvegicus OX=10116 GN=Adgrb1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10591	SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	Domain	Interproscan
PF07648	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan
PF19030	TSP1_ADAMTS	Thrombospondin type 1 domain	Domain	Interproscan
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR002350	Domain	Kazal domain	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR036058	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR019577	Domain	SPARC/Testican, calcium-binding domain	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR039675	Family	Cartilage intermediate layer protein 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15031	CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan